Query= MSMg01no493_m05.b1 MSMg01no493_m05.b1 CHROMAT_FILE:
MSMg01no493_m05.b1 PHD_FILE: MSMg01no493_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:25 2005
(607 letters)
>mm_chrX_43058905_43059911
Length = 1007
Score = 1143 bits (591), Expect = 0.0
Identities = 600/603 (99%), Gaps = 3/603 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcattattcc-aaaattattatattggaagaacaacagtatcaactaaccaga 63
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttcatta-tccgaaaattattatattggaagaacaacagtatcaactaaccaga 262
Query: 64 cccaccagagctcccaggaactaaaccatcaaacaaagagtacacatggagggacccatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cccaccagagctcccaggaactaaaccatcaaacaaagagtacacatggagggacccatg 322
Query: 124 gcttcagcagcatatgtagcagagggtggccttgttggctatcaacgggaagagaggact 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcttcagcagcatatgtagcagagggtggccttgttggctatcaacgggaagagaggact 382
Query: 184 gtggtcctgtgaaggcttgatgcctcagtgtaggggaatgccagggcagtgatgtgatag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtggtcctgtgaaggcttgatgcctcagtgtaggggaatgccagggcagtgatgtgatag 442
Query: 244 ttggtgggttgaagggggaacaccttcatagaagtaggaagaagggagataggatagaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttggtgggttgaagggggaacaccttcatagaagtaggaagaagggagataggatagaga 502
Query: 304 gttggtagaggggaaaccaaccaggaaatgggagaacatttgcaatgtaaatacataaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gttggtagaggggaaaccaaccaggaaatgggagaacatttgcaatgtaaatacataaat 562
Query: 364 tatccaataaaataaaaattatataatataatataacaattatataatataattatatta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tatccaataaaataaaaattatataatataatataacaattatataatataattatatta 622
Query: 424 ttatgttatatataatattataatatttt-attataaatgtacaatatctaacataaata 482
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 623 ttatgttatatataatattataatatttttattataaatgtacaatatctaacataaata 682
Query: 483 taaactttgatgggagagaacattcattaattgtcattttgagtttgttgtacctcattt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taaactttgatgggagagaacattcattaattgtcattttgagtttgttgtacctcattt 742
Query: 543 atatagttcttaattctattcatttacctaaatattgcataatttcactttttcttgtaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atatagttcttaattctattcatttacctaaatattgcataatttcactttttcttgtaa 802
Query: 603 cta 605
|||
Sbjct: 803 cta 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_m05.g1 MSMg01no493_m05.g1 CHROMAT_FILE:
MSMg01no493_m05.g1 PHD_FILE: MSMg01no493_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:25 2005
(641 letters)
>mm_chrX_43142743_43143783
Length = 1041
Score = 1031 bits (533), Expect = 0.0
Identities = 566/579 (97%), Gaps = 4/579 (0%)
Strand = Plus / Minus
Query: 63 actatgagctgctcatttaaaaatatctgtcaccacaatgttaatgtctttggttcatgt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 actatgagctgctcatttaaaaatatctgtcaccacaatgttaatgtctttggttcatgt 982
Query: 123 gttttgtagaagatcaaatattaattttaggagaaattataaaataaagaataaagaaaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 gttttgtagaagatcaaatattaattttaggagaaattataaaataaagaataaagaaaa 922
Query: 183 tataaaataaagaatacacacacacacacacacacacacacacacacacacacacacaca 242
||||||||||||||| ||||||||||||||||||||||||| | | | | | | | |
Sbjct: 921 tataaaataaagaat----acacacacacacacacacacacacatatatatatatatata 866
Query: 243 tatatatatatatatatatatataccctcatgcacaaagaagtaactgtaaactgaaaaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tatatatatatatatatatatataccctcatgcacaaagaagtaactgtaaactgaaaaa 806
Query: 303 caaggtgaacttacaaatgcaaactgtgaataagtaaataaatacaaatcagtatatgat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caaggtgaacttacaaatgcaaactgtgaataagtaaataaatacaaatcagtatatgat 746
Query: 363 tagaaaaattgcatatattcaaaaatagataaaatgaggtacacatcaatctactcattg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagaaaaattgcatatattcaaaaatagataaaatgaggtacacatcaatctactcattg 686
Query: 423 attatcctgttgataacatgttattttaacagtttctgctctggaaaattcacttaaata 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attatcctgttgataacatgttattttaacagtttctgctctggaaaattcacttaaata 626
Query: 483 aaatagtttaaatgaataaataatctcatttagtaattacatatgaattaaaatttgtta 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 aaatagtttaaatgaataaataatctcatttagtaattacatatgaattaaaatttttta 566
Query: 543 ttaccaaatactacaccaaacaataaaagttttggagctatttaattcattttatgttta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaccaaatactacaccaaacaataaaagttttggagctatttaattcattttatgttta 506
Query: 603 tagtagcagtcaaagaaatatgatcacaattaaattcca 641
|||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagtagcagtcaaagaaatatgatcacaattaaattcca 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
