BAC Information

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BAC

Clone NameMSMg01-494C05
ChromosomeX (Build37)
Map Location 32,052,612 - 32,053,075
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419, LOC100039429, LOC100040698, LOC630028, LOC100040722, LOC100040732, LOC100040743, LOC385298
Downstream geneLOC100039460, LOC100040781, LOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557, LOC100039573, EG665074, LOC100039585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494C05.T7 (MSMg01no494_c05.b1)MSMg01-494C05.TJ (MSMg01no494_c05.g1)
ACCAG571489AG571490
length729725
length of high quality
(start - end)
583 (60 - 642)464 (66 - 529)
definitionCHROMAT_FILE: MSMg01no494_c05.b1 PHD_FILE: MSMg01no494_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:54 2005CHROMAT_FILE: MSMg01no494_c05.g1 PHD_FILE: MSMg01no494_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTAA
TTTCTTGGAATTCTTTCTTATTTCAACCCTGACCAAGTATCATTCAGCAG
AAAGTTTTTTAGTTTTCATGAGTATGTGGACTTTCTGTTGTTTTGGTTGT
TATTAACATCTAGCCTTATCCTGATGTTATCTGATAGAATGCATGTGAGT
ATTCCCATTTTCTTGTATCAGTTGATGCTTTTGTTTTATGACCAATTATA
TTATCAGTTTTGGGGAATGTTCCATGAGGAACTCAGAAGAATATATATTC
TCTTGTTTTGGCATGAAATGTTCTATTGATATCTATTAAATCCATTTGGG
TCAAGACTTCTGTTAGTTTTACTGTGTCTCTGTTATTTTCTTTTCTTCTT
TTTTTTTTTTTTTGTTAGGGATGACCTGTTTCTGCACCTTAGTGGTCTCG
GCTAGAAGACTTGAAGACAGGCCAGCCCACAGATATAGGCATTTCTAATT
TTATGTACTTGCAACTTGATCATACAGCATGCAAGAATGTGTTAGAGCCA
AGGAGATTTCAAAAAAATAATTGAAAACATAAACAAAGGCAATTAAGTAC
ACAACTGTGTTCAAAATTTATTATTGACGGGTACTTGAGATCAGTAGTTA
CAAATTCATTTGATGAACTTTTACCTTGGGTTTTTTTTTATACTACTCAA
ATCAGGCCTATCAATTTGTATTCAAGTGG
TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATCCCAGGTGGTTCCTGTTAGACCTTCTGTGTTT
GCATTCCTCTGTTTTATGTAAGAATCCAGTAACCTCTTTCTACCTTGCGG
GTATGTCACCCAACTTCCTTATTGTCTTCTGTATAAAAAGTTTGATGCTC
GATTTGACAAATTACATTCAGATTCTACACAACCTCTCCTGTGTGCATCT
GTCTGTCATTCATCTGACGCTTTGCCCACCCGCGCCTAGAGACCCGTTCC
ACGCAGACAAAGGCACCCAGAGGGTCTGCAGCAGGGTAACCTTTGAGAAG
GTGATCAAAAGCAGAGGAATGTAAAAGTCTTGGCTGAGCTCCACCCAGCA
GACACCACCATTAAGTAGGCCTCCAAGTACAGTGCACATATTCATAGGCG
TATTTTCAACATAAAAGGAGTCTGAGTTTCTCAGTTTAGCTTCTCCTGAG
GCTGTAATGTACTGGCTAGGTAAAAACGTGTCTTGAAAGGGGCAACTTTA
CTAATGAAAGCTTCCATACTAACAATCTACAATTGCCTATGATAGATCCT
GAAAAATACATATAGGATTTTGGCTTAAAACCGGACTACTCAAATTCATT
CCTTGATCTCTAATGGCCTGAATAAATGATAATTAGCTCTCTTCATCATG
TATTCAACAGATCACGTTTTTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_c05.g1 MSMg01no494_c05.g1 CHROMAT_FILE:
MSMg01no494_c05.g1 PHD_FILE: MSMg01no494_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:54 2005
         (464 letters)



>mm_chrX_32052412_32053275
          Length = 864

 Score =  835 bits (432), Expect = 0.0
 Identities = 456/464 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcccaggtggttcctgttagaccttctgtgtttgcattcctctgttttatgtaagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatcccaggtggttcctgttagaccttctgtgtttgcattcctctgttttatgtaagaat 260

                                                                       
Query: 61  ccagtaacctctttctaccttgcgggtatgtcacccaacttccttattgtcttctgtata 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagtaacctctttctacgttgcgggtatgtcacccaacttccttattgtcttctgtata 320

                                                                       
Query: 121 aaaagtttgatgctcgatttgacaaattacattcagattctacacaacctctcctgtgtg 180
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 aaaagtttgatgcttgatttgacaaattacattcagattctacacaatctctcctgtgtg 380

                                                                       
Query: 181 catctgtctgtcattcatctgacgctttgcccacccgcgcctagagacccgttccacgca 240
           ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 381 catctttctgtcattcatctgacgctttgcccacccgtgactagagacccgttccacgca 440

                                                                       
Query: 241 gacaaaggcacccagagggtctgcagcagggtaacctttgagaaggtgatcaaaagcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacaaaggcacccagagggtctgcagcagggtaacctttgagaaggtgatcaaaagcaga 500

                                                                       
Query: 301 ggaatgtaaaagtcttggctgagctccacccagcagacaccaccattaagtaggcctcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaatgtaaaagtcttggctgagctccacccagcagacaccaccattaagtaggcctcca 560

                                                                       
Query: 361 agtacagtgcacatattcataggcgtattttcaacataaaaggagtctgagtttctcagt 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtacagtgcacatattcataggagtattttcaacataaaaggagtctgagtttctcagt 620

                                                       
Query: 421 ttagcttctcctgaggctgtaatgtactggctaggtaaaaacgt 464
           ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 ttagcttctcctgaggccgtaatgtactggctaggtaaaaacgt 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)