XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGGTATT
CCACAGGGATTTGCTTAGGCCCCTGGGGATGAGGATGGAGAGTGAGAAGT
AACAGCAGGTAGACTGCTACAAAGTAGGAATGATACTGGAACATTGCATG
TGGAGTTTTCTAGAGAGCATTTATATCTGATGCTCACATACCTGCTTCTC
TGGCCTATTTGCTTATCTGGCAAGTTCTCAGGGAATGCCTACTGGAGTTG
GGAGCAGAGACAAAGGGATATGCCCATAGAAATGTTGAGGAGAAAATCTA
TATAATTTTCTGAAATTGGGGAGTCAGAGGAATAGAGACTGCAGCATATG
GATGTACTAAAAATTAGAGATGCAAATAGGGGATTAAACTTGCAGGAGGG
TGGTAAAAGATGAAGGTCTGTAGTTAGTCTACCTGCTTCCTTGACATGGG
TAGATATGATCTTAATTTAGAAATAAGAAACATTAATCTTTAGTTTATAT
CTTATGTCTCAGGTTATCAAGAGGGTGGACTCCAGAAAATCAAATAGCCC
CCTTAAAAGATGGGGCTCAGAGCTGAACAAAGAATTCTCACCCGAGGAAT
ACCAAAAGGCTGAGAAACACCTGAAAAAATGGTCAACATCCTTAGTCATC
AGAGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAG
AATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGTGGGCATGCAGAATGGGGCAGTAAATGGCCAGAGTG
AGATTGTTGAATCTTCCAGAAATTGATCAATTTCAAACTATAAAAGAGAA
GGTAAAGCTCCTTATTAATATGTAAAATCAAGTGAACACAGCATTCACTA
AATTTATAATTACCAATGTCTGACTAATTTGAGCAAACATTAACTATAAC
TCAAAATATAAGATAAGCTTCTATCCTAATATAAATGTCATATCTGAATG
TAAATAAAGTCTTATCATTTTCTGCCTAAATAAAATATCTGTAGGAATGG
ATAGCAAAAGTTCCCAGTATGCCTGTAATGGTATAATTTCTAAAGTAATG
TAATCTTTAAAAAAAATTACATTTGAAAAAGAGAACAAAGAGAAAAAGCA
TATCTCAGTAGCAAAACTGACAGTAAAATATGACTTCGGAGTTGAGATTA
AATTTAATAGTAGCACACACAAATAATACTAATCGTATGTGCTTAGTTCA
ATTTGATGAAAGTGAGCAATACACCTATGATCCTCACTTGCAAAGAAAGT
ATACACTTATTTTAGTTACCTCAAACCATTTCTAAAATAATAAAAGATAA
ATATGACTATAATGATTATTATATGATGTAGAAATATGGCATAATGGCAT
AATTATTTCTTTAATACATTTTTTAGCATAGTACTGACNAAAAA

Query= MSMg01no494_f16.g1 MSMg01no494_f16.g1 CHROMAT_FILE:
MSMg01no494_f16.g1 PHD_FILE: MSMg01no494_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:10 2005
         (636 letters)



>mm_chrX_42403581_42404615
          Length = 1035

 Score = 1210 bits (626), Expect = 0.0
 Identities = 632/634 (99%), Gaps = 1/634 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgggcatgcagaatggggcagtaaatggccagagtgagattgttgaatcttccagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tgtgggcatgcagaatggggcagtaaatggccagagtgagattgttgaatcttccagaaa 774

                                                                       
Query: 61  ttgatcaatttcaaactataaaagagaaggtaaagctccttattaatatgtaaaatcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ttgatcaatttcaaactataaaagagaaggtaaagctccttattaatatgtaaaatcaag 714

                                                                       
Query: 121 tgaacacagcattcactaaatttataattaccaatgtctgactaatttgagcaaacatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgaacacagcattcactaaatttataattaccaatgtctgactaatttgagcaaacatta 654

                                                                       
Query: 181 actataactcaaaatataagataagcttctatcctaatataaatgtcatatctgaatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 actataactcaaaatataagataagcttctatcctaatataaatgtcatatctgaatgta 594

                                                                       
Query: 241 aataaagtcttatcattttctgcctaaataaaatatctgtaggaatggatagcaaaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aataaagtcttatcattttctgcctaaataaaatatctgtaggaatggatagcaaaagtt 534

                                                                       
Query: 301 cccagtatgcctgtaatggtataatttctaaagtaatgtaatctttaaaaaaaattacat 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 533 cccagtatgcctgtaatggtataatttctaaagtaatgtaatcttt-aaaaaaattacat 475

                                                                       
Query: 361 ttgaaaaagagaacaaagagaaaaagcatatctcagtagcaaaactgacagtaaaatatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttgaaaaagagaacaaagagaaaaagcatatctcagtagcaaaactgacagtaaaatatg 415

                                                                       
Query: 421 acttcggagttgagattaaatttaatagtagcacacacaaataatactaatcgtatgtgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 acttcggagttgagattaaatttaatagtagcacacacaaataatactaatcgtatgtgc 355

                                                                       
Query: 481 ttagttcaatttgatgaaagtgagcaatacacctatgatcctcacttgcaaagaaagtat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttagttcaatttgatgaaagtgagcaatacacctatgatcctcacttgcaaagaaagtat 295

                                                                       
Query: 541 acacttattttagttacctcaaaccatttctaaaataataaaagataaatatgactataa 600
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 294 acacttattttagttacctcaaatcatttctaaaataataaaagataaatatgactataa 235

                                             
Query: 601 tgattattatatgatgtagaaatatggcataatg 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tgattattatatgatgtagaaatatggcataatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space:   641650
Effective search space used:   641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)