BAC Information

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BAC

Clone NameMSMg01-494M09
ChromosomeX (Build37)
Map Location 123,162,220 - 123,162,463
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665579, EG665611, EG626048, LOC100040410, LOC100039903
Downstream geneLOC665679, 4932411N23Rik, Gm381, LOC100040472, Gm382, 4921511C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494M09.T7 (MSMg01no494_m09.b1)MSMg01-494M09.TJ (MSMg01no494_m09.g1)
ACCAG571974AG571975
length749734
length of high quality
(start - end)
194 (63 - 256)244 (65 - 308)
definitionCHROMAT_FILE: MSMg01no494_m09.b1 PHD_FILE: MSMg01no494_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:42 2005CHROMAT_FILE: MSMg01no494_m09.g1 PHD_FILE: MSMg01no494_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCCTT
TCTCAAAAATTTTTTTATAATTTTTTTCAATTTTCTCACAAATACATTCT
AATAAAATCTTTTATTTTAACTTGCAACGAAGATCTCTACTTTCTCAAAT
AGTGAACATTATTTTTCTACGTCTTCAATAATTCAAGCCTTTTTCCATCA
ATTTTTTTACAACTTATCCATATTTTTGTATAATTTTTGCATTTTTACCA
AATATGCTGTATAAGAACTCCTCGAATTTAACAAAAAAGTCCACACACAA
ATTTTTTTTTTTTAGAAAACAGGGTTTCTGTGCGTGTTGGGCACCCCACG
TTTTTTTGATTCCGTTTTGTTTTTCGGGGGTGTACCATACTCTTTTTGGT
GGTGAATTTTGGGGCAAACTTTTTTTCTAATAAAAAAATTTCCATTTCTA
TTTCTTGGGTATTTTCTCGCATCTAGAAACAACAGGTTTCTTCCTTTTTT
TTTGTTTAAAACTGGGGAGGGGTTCCCGTTTTCAGCCGGATGGTTTCCCC
ACATTGCGCGTTTTTTTTTTATCTTTCCTTTTTATTCGTATTTTATATCT
ATTACGTTTTTTCCCCCCGGTATATGGAGGTGAATTTTCTTCCTTTTTTT
GTGATATATCCGTAGAATAGTGTTTGGAAAAGAGATAACGTTCCTACTGT
TTTTTTTACATAGATAAGTATTGAAACTTTACAGTTTTTTTTTTACTTA
GTATGGGTGGNNGGTTCCNGGTACCTAAGTGGAGGNNGAACTANAGAAGT
AACAAAAGAAGGGTGGACAACTGCTCTCTGGCTCAACAGCACCAGCTCTT
AGCATTAGATTTAGCCCCCATATGTCTCTCCCTGTAGTCAGTTTTTCCCC
TCCCCCCTCTCTCATTTGCAGCCTGGTGGTTCAGCCAGATTGCCTGAGAA
TCAAGTTTGGCTATGCACCCTGCCTTAGACCCTATTTGCTGCCTTTCCCA
ACCCCTGCATTTGTGGAGAACTTTTGGTACCACTTATATAAATTTGACAA
GTACTTGTCACTGGGCTCATGAATGTTGGTTCTGATTAGAATATTCACAT
TTGGGCTACTTCAAGGATCAAGGTGAACACAGCCAATGATTTTGATACTT
CCCTTTTGTATTGGTAATCCTGATAAGCTTCCAACCTGAGTGACTTGGGG
ACTTTATTGCTTTTTTTGATTACTACCTGGTCCACCTCTTTGTCAATTGC
CTTGTTCAATCCCTTTGTCTTTGACCTAAGATTTGACTCCATTCTCTGTT
ATGCACTTAGAAACTGCTTTTAAGCTGGGTGGAACATTTTACGCCATCTT
TGCCTCTTAACTGGTAGGTAGCCTTATTTAATCGTTCGTTCTATTTGTCC
TTTTTCTTTATACTTGTTTGCCTTTTCTCTCTGCTTCCTTACCCCTGTTC
GTTAGTTCTTATCCTCGATTAAGGGATTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_m09.g1 MSMg01no494_m09.g1 CHROMAT_FILE:
MSMg01no494_m09.g1 PHD_FILE: MSMg01no494_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:42 2005
         (244 letters)



>mm_chrX_123162020_123162663
          Length = 644

 Score =  418 bits (216), Expect = e-121
 Identities = 237/244 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggacaactgctctctggctcaacagcaccagctcttagcattagatttagcccccatatg 60
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ggacaactgctctctgtctcaacagcaccagctcttagcattagattgagcccccatatg 260

                                                                       
Query: 61  tctctccctgtagtcagtttttcccctcccccctctctcatttgcagcctggtggttcag 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctccctggagtcagtttttcccctcccccctctctcatttgcagcctggtggttcag 320

                                                                       
Query: 121 ccagattgcctgagaatcaagtttggctatgcaccctgccttagaccctatttgctgcct 180
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ccagattgcctgagaagcaagtttggctatgcaccctgccttagaccctacttgctgcct 380

                                                                       
Query: 181 ttcccaacccctgcatttgtggagaacttttggtaccacttatataaatttgacaagtac 240
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 381 ttcccaacccctgcatttgtggagaacttttggtagcacttatagaaatttgacaagtac 440

               
Query: 241 ttgt 244
           ||||
Sbjct: 441 ttgt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)