BAC Information

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BAC

Clone NameMSMg01-494N12
ChromosomeX (Build37)
Map Location 140,024,995 - 140,025,491
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039086, EG436235, Tmem164, Ammecr1, Rgag1, LOC209541, Chrdl1
Downstream genePak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494N12.T7 (MSMg01no494_n12.b1)MSMg01-494N12.TJ (MSMg01no494_n12.g1)
ACCAG572027AG572028
length722724
length of high quality
(start - end)
35 (76 - 110)572 (66 - 637)
definitionCHROMAT_FILE: MSMg01no494_n12.b1 PHD_FILE: MSMg01no494_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:47 2005CHROMAT_FILE: MSMg01no494_n12.g1 PHD_FILE: MSMg01no494_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCACTTTCTCAAGAGGATCCGCGGAATTCTCATT
TTCCCGATACCGAATGGCAGAGAAGCACCTGAAAAATGCTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGC
GTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGG
CTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGA
TATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAG
AAGATGCCCCAACTGGCAAGAAGGACACATGCTCCACTATGTTCATAGCA
GCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAAC
AGAGGAATGGATACAGAAGATGTGGTACATCTACACAATGGATTACTACT
CAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCAAATGGATGGAC
CTGGAGGGCATCATCCTGAGCGAGTTATCCCATTCACAAAGTGACTCACA
CAATATGTATTCACTGATAAGGGGATATTAGCCCCTAACCTAAGATCCCC
TAGATACTTTACCCATTTTCTTAAACACATGAAACTCAAGAATAATGAAG
ACTGAAGTGTGATCCCTATGCN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGGTCAGACATTTCCTGGAGGCAAGCTCTCCTC
TGGCAGAGATGGTGCACAGAGGGCTGAGGATCAGCCTCACCACCTGGGTG
CAGATGCAGACCCATAGGACCCTATTCCAGAAGCTCTGCCACTTTTGAGG
CCTGTGCTCTCCTAAGTGGACTTGCCTCAGTTAGTCACCAGAGAGAAAAT
ACATTTAAGATTCTTAAGCACCTTTTATTTTCCTTGAATAAAGACTTCCC
TGCCGGTTGGAAGTCAAATGGTAAACAACAGTTCAGCAAAGGGAATCTGA
AAACCTGTAATTTTCACTAGGGACATGACAAAGCTAGAATGTCCTCTTAA
AAATATGTCTTAGAAGATGGATAAGGTGGAATAGAACACAGGAAGTAAAG
CAGAGAGATCTTCAGGAGACTTGTGTGGATGTTTGAAGTGGGTATGACCT
ATGGAGGAAGAATGACTCAGAAAAGGCAGATTTTCAAAACATTTCAGAAG
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATGTATATATATATAT
GAGACTATATATACGTTCCTGGTTCAAACGGAATTACGTATTTACTTCCC
CTAAAGAAGACATTTCTCCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_n12.g1 MSMg01no494_n12.g1 CHROMAT_FILE:
MSMg01no494_n12.g1 PHD_FILE: MSMg01no494_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:47 2005
         (572 letters)



>mm_chrX_140024671_140025642
          Length = 972

 Score =  922 bits (477), Expect = 0.0
 Identities = 493/499 (98%), Gaps = 2/499 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggtcagacatttcctggaggcaagctctcctctggcagagatggtgcacagagggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 cagggtcagacatttcctggaggcaagctctcctctggcagagatggtgcacagagggct 762

                                                                       
Query: 61  gaggatcagcctcaccacctgggtgcagatgcagacccataggaccctattccagaagct 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 761 gaggatcagcctcaccacctgggtgcagatgcaggcccataggaccctattccagaagct 702

                                                                       
Query: 121 ctgccacttttgaggcctgtgctctcctaagtggacttgcctcagttagtcaccagagag 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 701 ctgccacttttgaggcctgtgctctcctaagtggacctgcctcagttagtcaccagagag 642

                                                                       
Query: 181 aaaatacatttaagattcttaagcaccttttattttccttgaataaagacttccctgccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aaaatacatttaagattcttaagcaccttttattttccttgaataaagacttccctgccg 582

                                                                       
Query: 241 gttggaagtcaaatggtaaacaacagttcagcaaagggaatctgaaaacctgtaattttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gttggaagtcaaatggtaaacaacagttcagcaaagggaatctgaaaacctgtaattttc 522

                                                                       
Query: 301 actagggacatgacaaagctagaatgtcctcttaaaaatatgtcttagaagatggataag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 actagggacatgacaaagctagaatgtcctcttaaaaatatgtcttagaagatggataag 462

                                                                       
Query: 361 gtggaatagaacacaggaagtaaagcagagagatcttcaggagacttgtgtggatgtttg 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 461 gtggaatagaacacaggaagtaaagcagagagatcttcaggggacttgtgtggatgtttg 402

                                                                       
Query: 421 aagtgggtatgacctatggaggaagaatgactcagaaaaggcagattttcaaaacatttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aagtgggtatgacctatggaggaagaatgactcagaaaaggcagattttcaaaacatttc 342

                              
Query: 481 agaagatatatatatatat 499
             || ||||||||||||||
Sbjct: 341 --aacatatatatatatat 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)