BAC Information

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BAC

Clone NameMSMg01-496F09
ChromosomeX (Build37)
Map Location 22,293,188 - 22,293,690
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc6a14, LOC100043180, LOC100043182, LOC100043956, EG436197, Ppia-psx_207.1, 1700023I07Rik
Downstream geneKlhl13, EG635719, Wdr44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496F09.T7 (MSMg01no496_f09.b1)MSMg01-496F09.TJ (MSMg01no496_f09.g1)
ACCAG573166AG573167
length713771
length of high quality
(start - end)
84 (79 - 162)503 (83 - 585)
definitionCHROMAT_FILE: MSMg01no496_f09.b1 PHD_FILE: MSMg01no496_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:38 2005CHROMAT_FILE: MSMg01no496_f09.g1 PHD_FILE: MSMg01no496_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGGGGGCNCNNNNNNNNNNNNNNNNNNNNCCCCTCAAAATTTNCNNCCC
CTAATACAACTCACTATCCCNANAGGATCCGCGGAATTCATTGAATGANG
TGGGAAAATATAAAATTTCAAGTTTANAAGTAAAATTTACAAATTTGGAC
AGCTAAAAATATTAAACCTAAATTTCACAACAAACANAAAAAAAANTCNA
AATAGAAAAAATTGGGCAAATAAAAGATATGGAGAAGAGGATGGGGGGTG
CGCAGACGGGTNNNCATNTTTGCGATAGACACTGTGACATCTCAATCTCG
CGAGTAGATATGAGACTGTCTCGACCCCTGGGCAACNNGAATTCCACCCA
GCNACTAGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGNNCTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGAAGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGGGGGGGGGGGGGGGGGGCTGGGGGGGTTNCTNNNNNNNNN
NNNNNNNNNNNNTNNNNNTTTTATTNNNNNNTTNNTTTTNTNNTNNTNNT
NNNNNTNTTTTTTTTNNNNTNNTTTTTTTTNNNNTTTTTTTTTTGGGGGG
GGGTGGGGGGGGG
NNNNTTCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGACCCAGCTG
GCCTGGAATTCATAGAAATCCACCTGTCTCTACATCCTGGATACTGGGAT
TAAAGGCACAGAATTCATAGTCTAAAAAGGTAAGAAACATGTAAATAAGA
ATGATTAATGTAACACCGTATGATATTTAAAATTATAGAAATCCTCTATG
TTGTAGAAGACAATTTACTGAGCTTTAGGTGTTAGAAAACAGGCAGGACA
GTTCTGTTGGAATTGTTATTGTTGTTCTTGTTGTTGTCGTCATTGTCGTT
GTTTTAATAAAAGGAAATGACACTAAGTTGCCCTTCAGAAATGAGTTTTT
TAAATTTTTTATTAAATATTTTCTTTATATACATTTCAAATTTCAAATGC
TACCCCAAAAGTTCCCTGTACCCTCCCCCCACCCTGCTCCCCTACCCACC
CACTCCTGCTTCTTAGCCCTGGCATTCCTCTGTACTGGGGCATATAAAGT
TTGCAATACCAAGGGGCCTCTCTTCCCAGTGATGGCCGACTAGGCCATCT
TCTGATACATATGCAGCTAGAGACACAAGCTCTGGGGGGACTGGTTAGTT
CATATTGTTGTCCCACCTATAGGGTTGCAGACCCCTTCAGCTCCATGGGT
ACTTTCTCTAGCTCCTCATTGGGAGCCCTGTGTTCCATCTATANATGACT
GTGAGCATCCACTTCTCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_f09.g1 MSMg01no496_f09.g1 CHROMAT_FILE:
MSMg01no496_f09.g1 PHD_FILE: MSMg01no496_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:38 2005
         (503 letters)



>mm_chrX_22293182_22294084
          Length = 903

 Score =  949 bits (491), Expect = 0.0
 Identities = 500/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtagacccagctggcctggaattcatagaaatccacctgtctctacatcctggat 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 actatgtagacccggctggcctggaattcatagaaatccacctgtctctacatcctggat 450

                                                                       
Query: 61  actgggattaaaggcacagaattcatagtctaaaaaggtaagaaacatgtaaataagaat 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 actgggattaaaggcacacaattcatagtctaaaaaggtaagaaacatgtaaataagaat 390

                                                                       
Query: 121 gattaatgtaacaccgtatgatatttaaaattatagaaatcctctatgttgtagaagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gattaatgtaacaccgtatgatatttaaaattatagaaatcctctatgttgtagaagaca 330

                                                                       
Query: 181 atttactgagctttaggtgttagaaaacaggcaggacagttctgttggaattgttattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atttactgagctttaggtgttagaaaacaggcaggacagttctgttggaattgttattgt 270

                                                                       
Query: 241 tgttcttgttgttgtcgtcattgtcgttgttttaataaaaggaaatgacactaagttgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgttcttgttgttgtcgtcattgtcgttgttttaataaaaggaaatgacactaagttgcc 210

                                                                       
Query: 301 cttcagaaatgagttttttaaattttttattaaatattttctttatatacatttcaaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 209 cttcagaaatgagttttttaaattttttattaaatattttctttataaacatttcaaatt 150

                                                                       
Query: 361 tcaaatgctaccccaaaagttccctgtaccctccccccaccctgctcccctacccaccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tcaaatgctaccccaaaagttccctgtaccctccccccaccctgctcccctacccaccca 90

                                                                       
Query: 421 ctcctgcttcttagccctggcattcctctgtactggggcatataaagtttgcaataccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  ctcctgcttcttagccctggcattcctctgtactggggcatataaagtttgcaataccaa 30

                                  
Query: 481 ggggcctctcttcccagtgatgg 503
           |||||||||||||||||||||||
Sbjct: 29  ggggcctctcttcccagtgatgg 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)