Query= MSMg01no496_k01.b1 MSMg01no496_k01.b1 CHROMAT_FILE:
MSMg01no496_k01.b1 PHD_FILE: MSMg01no496_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:01 2005
(629 letters)
>mm_chrX_71353765_71354793
Length = 1029
Score = 1170 bits (605), Expect = 0.0
Identities = 623/629 (99%)
Strand = Plus / Minus
Query: 1 tagattggctgtccagtttactccagagatctgtttgtctttctcccaaacactggaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 tagattggctgtccagtttactccagagatctgtttgtctttctcccaaacactggaatt 937
Query: 61 tcaaaaacaagcagccacacttggctgttaattagtttctggggatgaagctcagtcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tcaaaaacaagcagccacacttggctgttaattagtttctggggatgaagctcagtcctt 877
Query: 121 cattctttcagataagcactttaccaactaagtcatctctccaccccacctccactccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 cattctttcagataagcactttaccaactaagtcatctctccaccccacctccactccca 817
Query: 181 gagtcagggcttttgctttatacctcaaaaggtaaagggaattagccaaaaccttcagag 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gagtcagggcctttgctttatacctcaaaaggtaaagggaattagccaaaaccttcagag 757
Query: 241 gaccacaaatatttttgattttcagacttctatagacaaagaacctagaagtcaactcaa 300
||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaccacaaagactagtgattctcagacttctatagacaaagaacctagaagtcaactcaa 697
Query: 301 tggatgaaactaagacatttccccacctcccctgtatatcacctcattagcagcagtttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tggatgaaactaagacatttccccacctcccctgtatatcacctcattagcagcagtttt 637
Query: 361 cctagagaagagagtgggagactgtaacaccctccccactctgagttcctggcaggaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cctagagaagagagtgggagactgtaacaccctccccactctgagttcctggcaggaact 577
Query: 421 ttccatgccagtgcatagatagcatgtagcccgaggccagtgacattgggggaaacttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttccatgccagtgcatagatagcatgtagcccgaggccagtgacattgggggaaacttct 517
Query: 481 aacctgtgtaggctgtaatctcagccaaggaggcagccagccagcagagatatcgttccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aacctgtgtaggctgtaatctcagccaaggaggcagccagccagcagagatatcgttccc 457
Query: 541 aggcttcaaaaggaaaggagcatgtaggtggttactttaataggcacagcacattagtta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aggcttcaaaaggaaaggagcatgtaggtggttactttaataggcacagcacattagtta 397
Query: 601 cccacgggataaaactctgctacttagcc 629
|||||||||||||||||||||||||||||
Sbjct: 396 cccacgggataaaactctgctacttagcc 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_k01.g1 MSMg01no496_k01.g1 CHROMAT_FILE:
MSMg01no496_k01.g1 PHD_FILE: MSMg01no496_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:01 2005
(624 letters)
>mm_chrX_71178367_71179390
Length = 1024
Score = 1118 bits (578), Expect = 0.0
Identities = 606/624 (97%), Gaps = 16/624 (2%)
Strand = Plus / Plus
Query: 1 tggaatttactttaaaaccacatgactattataagaatgtgcttttgttttaatcccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tggaatttactttaaaaccacatgactattataagaatgtgcttttgttttaatcccagg 276
Query: 61 tatagggatatggggctgctgtagacttgtttgtagcagctcaccatgattttgccccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tatagggatatggggctgctgtagacttgtttgtagcagctcaccatgattttgccccat 336
Query: 121 gctgccacagaggcatggctctgccagctgcggataatttctgtgattgtggatgtttgg 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 337 gctgccacagaggcatggctctgccagctgcagataatttctgtgattgtggatgtttgg 396
Query: 181 aattctaggaacttttcagaaaatatacatatacatacatatatatatatatgtatatat 240
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 397 aattctaggaacttttcagaaaatatacat----atacatatatatatata--tatatat 450
Query: 241 atatatataaatatataaatatatataaatacaaggacccccgagaggtaaggttggtga 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atatatat----------atatatataaatacaaggacccccgagaggtaaggttggtga 500
Query: 301 atgttggtcatttagggagattggttgcagtttgttagtagcagtggtcaaagaagaaac 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgttggtcatttatggagattggttgcagtttgttagtagcagtggtcaaagaagaaac 560
Query: 361 aaaaagaaattacattcagggattttcctaattcctctcatctctatccttgttcctctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaagaaattacattcagggattttcctaattcctctcatctctatccttgttcctctc 620
Query: 421 ctatttagtgttagggggataaactggaggataaagggtgaggaaaaaagagcccacaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatttagtgttagggggataaactggaggataaagggtgaggaaaaaagagcccacaat 680
Query: 481 gtagcaaagaccagctacataggttagtggaactttcctttgctctctttactgacagga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtagcaaagaccagctacataggttagtggaactttcctttgctctctttactgacagga 740
Query: 541 taccttcaaaaaacaaactgtagtaagttttggtttatttaaaaatccagttatgttata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taccttcaaaaaacaaactgtagtaagttttggtttatttaaaaatccagttatgttata 800
Query: 601 tgaatgtttgtgttttatcccagg 624
||||||||||||||||||||||||
Sbjct: 801 tgaatgtttgtgttttatcccagg 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
