NNNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGTGCCATAGCCTGTGGTTGTCTATTTATTACTTGA
TACTGTAGTCCCTGGCACATAATATTTAATTCTGAACAATTGTTTACCAC
TCTCATTCCCAATTCAGTGTTTTCATATCTCCTAGACTTTATGTTTAATG
TCTGTGTATATTCCTCAGTAGTTGCTTGTTAGCATGATTTTCCCAGTGAT
CTTGGGCACTCTTCCAACTAGCATTAATACTTTCTGTTTTCTGAACATTA
TTTTATTGTTTACAAGTAGACTATACCTGTATGTAATGACTTGAAAGTTA
ATAAGAGAAAATATTACACTCAATTTATTACAAGCACATGAAGAAACACA
TGGCCATGACACACCAGGTGATTCATGGGTACAGAAATTAGCAGAGGATA
CATTTAAATGATTAAAGTGAACAGACTCTCTTTTAAGAGATCAATATTAT
AAACACATTATTCATGATGGACGATTTCAGTGGTAAACCTAGACGATTTC
AGTATGGCAATTTGTGTGATTAAGTAGATATAAAAACGAAGAAGAAATAC
CTTTTGACTGTTCAATGGCAGAAGAAGAATAGATAATTTAACAATTACTT
AAACACATGATGAAGCAAATATGAGCCTCAATACCTATTGCATGTTATTT
AAAAGTGCATNCAGAGTTTTGAGAAATAGAACGATAGCTATCTATACTCC
C

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACTTGTCTCCAATGTGTTTAGAGTTCAGTCCACTTCAGAAT
ACTTACCTACCTGTAAAAGTATCTTTTACATGCCTGATGTAATTGTTGCC
TCTGAGGGTTACTGCTAATATGTTTACCCTTTCTGTTTCTTTCTGACCTC
TGTCTAGCTCTTTCAACTCAGCTGTTTAAACTCCTCCTCAATCTCACTGG
CTTCTCTTGGCTTCTCAGTGAATTGTTCTGATCGGCAGCAAAGTAACTCT
GGCTTATTGTTCTAATCTTCTGGCTCCTTATTCTCTGGCTTCAACTGCCT
CTGGTACAGGAACAGAACTGAACTCACTTCAACTCTACTGCCCTGCATCC
TGTACTGACTGGCTGAACAGACCTCAACTGATTGAACAGAACTGACTGAC
TCTCTTCATGCAATGCTCTTAACTCGCCTCCCTTTCCTGTTTGTTCTCTT
GTCTAACAAATCTTGGTCTGATTTATCACTTTGCCTGTTCTTCAATTAAT
TGTCATTTTCAAACATGACTGCTACCTACTGTAAACTAACCTTACCTATT
TTGTTTGGAATTAGAAGTACTAACTTCTAAGGGAATGTCTGCATTGCAGC
CAGAGCAGCCATGTTGTCTTTTGCCACATGGTCTCCAGCAGTCACATTTC
ACACATCACTTTATTTTAT

Query= MSMg01no498_c18.b1 MSMg01no498_c18.b1 CHROMAT_FILE:
MSMg01no498_c18.b1 PHD_FILE: MSMg01no498_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:05 2005
         (611 letters)



>mm_chrX_80530329_80531339
          Length = 1011

 Score = 1166 bits (603), Expect = 0.0
 Identities = 606/607 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgccatagcctgtggttgtctatttattacttgatactgtagtccctggcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gaattcagtgccatagcctgtggttgtctatttattacttgatactgtagtccctggcac 752

                                                                       
Query: 65  ataatatttaattctgaacaattgtttaccactctcattcccaattcagtgttttcatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ataatatttaattctgaacaattgtttaccactctcattcccaattcagtgttttcatat 692

                                                                       
Query: 125 ctcctagactttatgtttaatgtctgtgtatattcctcagtagttgcttgttagcatgat 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 691 ctcctagactttatgtttaatgtctgtgtatattcctcagtagttgctcgttagcatgat 632

                                                                       
Query: 185 tttcccagtgatcttgggcactcttccaactagcattaatactttctgttttctgaacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tttcccagtgatcttgggcactcttccaactagcattaatactttctgttttctgaacat 572

                                                                       
Query: 245 tattttattgtttacaagtagactatacctgtatgtaatgacttgaaagttaataagaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tattttattgtttacaagtagactatacctgtatgtaatgacttgaaagttaataagaga 512

                                                                       
Query: 305 aaatattacactcaatttattacaagcacatgaagaaacacatggccatgacacaccagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaatattacactcaatttattacaagcacatgaagaaacacatggccatgacacaccagg 452

                                                                       
Query: 365 tgattcatgggtacagaaattagcagaggatacatttaaatgattaaagtgaacagactc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgattcatgggtacagaaattagcagaggatacatttaaatgattaaagtgaacagactc 392

                                                                       
Query: 425 tcttttaagagatcaatattataaacacattattcatgatggacgatttcagtggtaaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcttttaagagatcaatattataaacacattattcatgatggacgatttcagtggtaaac 332

                                                                       
Query: 485 ctagacgatttcagtatggcaatttgtgtgattaagtagatataaaaacgaagaagaaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctagacgatttcagtatggcaatttgtgtgattaagtagatataaaaacgaagaagaaat 272

                                                                       
Query: 545 accttttgactgttcaatggcagaagaagaatagataatttaacaattacttaaacacat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 accttttgactgttcaatggcagaagaagaatagataatttaacaattacttaaacacat 212

                  
Query: 605 gatgaag 611
           |||||||
Sbjct: 211 gatgaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)