NNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTATCCTGACTTACTAAAGAATTAATTTTACTTAAACTA
TGTATATACATGTGTGCCTACATGTGTGAACATGAAGACATTGCTTCAGG
AAGCCAGAAGAATACCATGGATCCCTTGGAACTGAAGTTTCATGTGGTTG
TGTGCAACCTGATATGGGTTCCGGGAACTGAACTTGCTTCTGGAAAAACA
GTGCATACTCTTAACCACCAAGTCACCTATTCATCCAGAGAGAATTATTT
TTCCTTAAATTTCTCAAAAGATTACTTCATTTTCACTGTCTTTTAAGTAG
AAAGTGTTTCTGTTTTTATTTTTTTCCTTTATTGAAAATAGATTCTGTTC
TCATACAACATATGCCCATTATAATTGCTCCAAGTACTCTATTTAGGAGG
CTCAAAAATGCATGTAACTCCACCTCCAACAGATGCTATGCTCCCTCCTT
GCCTCTGTAGGAGCTGCACTCAAATGTATGTCTCCACACCCAGAAACAGA
TGCATACACATAATTAAAATATATTATATATATTTATAAATATATATATA
TATTTAATTTTCTGATGGACAATGGCTTATACGCTAAGGTCAACAAATGA
CAAATGACACCTAATAAATTGCAAAGCTTCAGTAAAGCAAAGGACACTGT
CAATAGGACAAATGGCATCCAACAGAATAAGGAAAGATCTTTATCCACAC
TC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTTTGTTGGCTCTGGTCAGTCTTCT
TTTAATAAAAATGCCTCTTATTTACTGAAAAAAATGATAATAATAATAAC
AATAACCACCACCAGCACCACCACCACCATCATTTTGTAGTTAAACGCAT
TGAAAATTTCAAATTGGACACTAGAAATTTCATTTAGGCAGATGATCTTG
GGCTGTTTAATGATTTGTCTTTTGACAGTTAACAATCAACAAGAGGATTG
GTAGCATTAATGGTGTTTCTCAGACAGCTGTCCTCAAGAGCAGCCTTTAG
AGAATACTTTGGCTGTTGTTCATGGGGGGGGGAACTCTTAGAAACTTGAA
CAATATTTCTGTCCCCACAGCTCTAAATAATTCTCCCCAAAGCCCTTTCC
TTGTCAAAGAAGTGGGGAATATTAAACTTTTGTTCCATTTTAAATTTCAA
ATATTCCTAGAAGAAAGGGGATGGTCATAGAATTTTAATGTTTAAAAGTA
ATAAAATTTCTGGGTTTTTTTCTATTGTTTTGGAATGAAGTCTGAAGGTA
AGGAGTTTAATAACTTATCCCTGAGTCAGGAGCTATCAAGTGGTGGAACT
AAGTAAACCCAGGCCTCCTCTCTTATGTCCAGGGCTATGGGGGGCTCACA
TTCANTTGTGTTTGGCAATAACAAACTTGACATACATGTCTTTCAGNTGT
TTGGNGAAAGTTCAACCAGATATTT

Query= MSMg01no498_k16.g1 MSMg01no498_k16.g1 CHROMAT_FILE:
MSMg01no498_k16.g1 PHD_FILE: MSMg01no498_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:48 2005
         (519 letters)



>mm_chrX_73438121_73439041
          Length = 921

 Score =  963 bits (498), Expect = 0.0
 Identities = 514/522 (98%), Gaps = 7/522 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctttgttggctctggtcagtcttcttttaataaaaatgcctcttatttactgaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tctctttgttggctctggtcagtcttcttttaataaaaatgcctcttatttactgaaaaa 769

                                                                       
Query: 61  aatgataataataataacaataaccaccaccagcaccaccaccaccatcattttgtagtt 120
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 aatg---ataataataacaataaccaccaccagcaccaccaccaccatcattttgtagtt 712

                                                                       
Query: 121 aaacgcattgaaaatttcaaattggacactagaaatttcatttaggcagatgatcttggg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aaatgcattgaaaatttcaaattggacactagaaatttcatttaggcagatgatcttggg 652

                                                                       
Query: 181 ctgtttaatgatttgtcttttgacagttaacaatcaacaagaggattggtagcattaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ctgtttaatgatttgtcttttgacagttaacaatcaacaagaggattggtagcattaatg 592

                                                                       
Query: 241 gtgtttctcagacagctgtcctcaagagcagcctttagagaatactttggctgttgttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gtgtttctcagacagctgtcctcaagagcagcctttagagaatactttggctgttgttca 532

                                                                       
Query: 301 t---gggggggggaactcttagaaacttgaacaatatttctgtccccacagctctaaata 357
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tggggggggggggaactcttagaaacttgaacaatatttctgtccccacagctctaaata 472

                                                                       
Query: 358 attctccccaaagccctttccttgtcaaagaagtggggaatattaaacttttgttccatt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 attctccccaaagccctttccttgtcaaagaagtggggaatattaaacttttgttccatt 412

                                                                       
Query: 418 ttaaatttcaaatattcctagaagaaaggggatggtcatagaattttaatgtttaaaagt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttaaatttcaaatattcctagaagaaaggggatggtcatagaattttaatgtttaaaagt 352

                                                     
Query: 478 aataaaatttctgggtttttttctattgttttggaatgaagt 519
           ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 351 aataaaatttctggg-ttttttctattgttttggaatgaagt 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 921
Length adjustment: 10
Effective length of query: 509
Effective length of database: 911
Effective search space:   463699
Effective search space used:   463699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)