Query= MSMg01no498_p19.b1 MSMg01no498_p19.b1 CHROMAT_FILE:
MSMg01no498_p19.b1 PHD_FILE: MSMg01no498_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:15 2005
(615 letters)
>mm_chrX_161494971_161495985
Length = 1015
Score = 1114 bits (576), Expect = 0.0
Identities = 604/614 (98%), Gaps = 2/614 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaagtggggtactctgctggctttgatacctttggtgatgagacagtgaggtag 63
||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcaagttgggaaatgtgctggctttgatacctttggtgatgagacagtgaggtag 261
Query: 64 tccagctgtgagaagccagatattcctggatctacttgctgtaacagtaaccccataact 123
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 262 tccagctgtgagaagccagctattcctggatctacttgctgtaacagtaaccccatgact 321
Query: 124 gactactgttaacatttctcccatatcaatgtccttttccccttgctacaactttaagga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gactactgttaacatttctcccatatcaatgtccttttccccttgctacaactttaagga 381
Query: 184 tccttcctcaaggaaattgctgacattttgctgagactaactcctggtctcagttgccat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tccttcctcaaggaaattgctgacattttgctgagactaactcctggtctcagttgccat 441
Query: 244 tttaaaaacagtacagtttattttcatcattttcaatataaaaaatatgctgattcccta 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 442 tttaaaaacagtacagtttattttcatcattttcaatagaaaaaatatgctgattcccta 501
Query: 304 aaagcttacatctgaagttacaatgatagtagtacctttggttatgacattaaaatagaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaagcttacatctgaagttacaatgatagtagtacctttggttatgacattaaaatagaa 561
Query: 364 aaataaaaaaaa--gaaaaatattttcgccttcataaactttataagcttatcacaataa 421
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 562 aaataaaaaaaaaagaaaaatatttttgccttcataaactttataagcttatcacaataa 621
Query: 422 gcttataaaatgctgtcttattgctgagatcctagagttctggtcctatgttgacaggta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcttataaaatgctgtcttattgctgagatcctagagttctggtcctatgttgacaggta 681
Query: 482 agagagcaaatttatctagaatcttgtgtaccaaagtagaatttttctctatacatttaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agagagcaaatttatctagaatcttgtgtaccaaagtagaatttttctctatacatttaa 741
Query: 542 ttcttactatttgattatagtacagttctacatggtaaatttgttggtaaatatggttcc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttcttactatttgattatagtacagttctacatggtaaatttgttggtaaatatggttcc 801
Query: 602 actaaaagggtatt 615
||||||||||||||
Sbjct: 802 actaaaagggtatt 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_p19.g1 MSMg01no498_p19.g1 CHROMAT_FILE:
MSMg01no498_p19.g1 PHD_FILE: MSMg01no498_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:15 2005
(488 letters)
>mm_chrX_161636493_161637380
Length = 888
Score = 905 bits (468), Expect = 0.0
Identities = 483/488 (98%)
Strand = Plus / Minus
Query: 1 attagctgatctagatgtgcctcttctctggagttgtgtgattgctgtgttactagctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 attagctgatctagatgtgcctcttctctggagttgtgtgattgctgtgttactagctag 629
Query: 61 tttcaaaacccaaaatcaccataggagagaatgagtgggaatgagcaaggtagatgttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tttcaaaacccaaaatcaccataggagagaatgagtgggaatgagcaaggtagatgttta 569
Query: 121 atctcctataaatcctcatgtcataaaatgttgagaggaatagaaagaattccatcatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atctcctataaatcctcatgtcataaaatgttgagaggaatagaaagaattccatcatac 509
Query: 181 tatggccgcacacatggtatcacaataaggctgagtccacttccacatctagctttgctt 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tagggccgcacacatggtatcacaataaggctgagtccacttccacatctagctttgctt 449
Query: 241 ttattagtttcttttattctgggggaattgtttaatatctctgttccattatgttcacaa 300
|||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttattagtgtctttaaatctgggggaattgtttaatatctctgttccattatgttcacaa 389
Query: 301 tcatacatagaagttaaatgagtgatatattacattttttgaaaaacgagtgtaccctgt 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 388 tcatacatagaagttaaatgagtgatatattacattttttgaaaaatgagtgtaccctgt 329
Query: 361 gcaattatttgtggtgtcatatagttagagtggattggttaaaatgatacaaacctagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcaattatttgtggtgtcatatagttagagtggattggttaaaatgatacaaacctagta 269
Query: 421 tttccattttgttcattattagttgcataccttcccttttacccacatcacttatacaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttccattttgttcattattagttgcataccttcccttttacccacatcacttatacaca 209
Query: 481 tagagaaa 488
||||||||
Sbjct: 208 tagagaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
