Query= MSMg01no500_j03.b1 MSMg01no500_j03.b1 CHROMAT_FILE:
MSMg01no500_j03.b1 PHD_FILE: MSMg01no500_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:13 2005
(608 letters)
>mm_chrX_37502586_37503593
Length = 1008
Score = 1091 bits (564), Expect = 0.0
Identities = 593/604 (98%), Gaps = 6/604 (0%)
Strand = Plus / Plus
Query: 8 gaattctctgctgtcc--cacatccaaaatttagctttactattatttttgctccttttg 65
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctctgctg--caacacatccaaaatttagctttactattatttttgctccttttg 265
Query: 66 agattatgagaatgtcttcagttattgcaattactttaactcaagcacagtttaaatgct 125
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agattatcagaatgtcttcagttattgcaattactttaactcaagcacagtttaaatgct 325
Query: 126 tttgaaataattctagatttacagaataatatcaaatcatttacaagcatcatatttgga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttgaaataattctagatttacagaataatatcaaatcatttacaagcatcatatttgga 385
Query: 186 ccttgtgtacagaaccagcattaagaacttacataattatacaaaaagaagaattttata 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccttgtgtacagaaccagcattaagaacttacataattatacaaaaagaagaattttata 445
Query: 246 ttaagaaaatattatctagattccaccagtattgaaagtatttgtttccatgtaagtata 305
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttaggaaaatattatctagattccaccagtattgaaagtatttgtttccatgtaagtata 505
Query: 306 atacaaacaaagtttattgtatatctattttgtgtaacaaccacgc-taaagatgtccta 364
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 506 atacaaacaaagtttattgtatatctattttgtgtaacaaccac-cataaagatgtccta 564
Query: 365 acacattttaaggatgttaaacaaaatacaatcacattgtatgtaacctttgtcaattag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acacattttaaggatgttaaacaaaatacaatcacattgtatgtaacctttgtcaattag 624
Query: 425 ttttggttaatccatagtaatttatttgaaattcatacatattgtattgtgatagcaaaa 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttggataatccatagtaatttatttgaaattcatacatattgtattgtgatagcaaaa 684
Query: 485 gttattcatatgtattactaagaagttttgcagggtatggcatgtgtatacttgtttatc 544
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 685 gttattcatatgtattactaagaagttttgtagggtatggcatgtgtatacttgtttgtc 744
Query: 545 tattcactcagtaaattctttcaaggttttggctaataaactttggaataaatttctaag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tattcactcagtaaattctttcaaggttttggctaataaactttggaataaatttctaag 804
Query: 605 agct 608
||||
Sbjct: 805 agct 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_j03.g1 MSMg01no500_j03.g1 CHROMAT_FILE:
MSMg01no500_j03.g1 PHD_FILE: MSMg01no500_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:13 2005
(575 letters)
>mm_chrX_37644910_37645884
Length = 975
Score = 1023 bits (529), Expect = 0.0
Identities = 534/537 (99%), Gaps = 3/537 (0%)
Strand = Plus / Minus
Query: 42 tagataattgagatacaatatttatgaagaaaataagtaaatcaaccttctatttttaca 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 tagataattgagatacaatatttatgaagaaaataagtaaatcaaccttctatttttaca 916
Query: 102 ttaggtgttctgaaatagataggcaaagagcactgtgaaaatatactagaaagatatatg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ttaggtgttctgaaatagataggcaaagagcactgtgaaaatatactagaaagatatatg 856
Query: 162 ggaaatgagggttctgggaacaggaaaagaaggaggaggaccaggaggaag---agaaga 218
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 855 ggaaatgagggttctgggaacaggaaaagaaggaggaggaccaggaggaagagaagaaga 796
Query: 219 agaagaaaagaggaagaagacactgccctggaagaatgtgtaggctagagaaactattaa 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 agaagaaaagaggaagaagacactgccctggaagaatgtgtaggctagagaaactattaa 736
Query: 279 acttcctttcattaataattaatgagcctcaaagccagcagaaaaaaaactatccataac 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 acttcctttcattaataattaatgagcctcaaagccagcagaaaaaaaactatccataac 676
Query: 339 cactgattttagacagctatgattctgaacatgtttttattcttacacaatagctttcca 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cactgattttagacagctatgattctgaacatgtttttattcttacacaatagctttcca 616
Query: 399 ataaaattgtcttccataatgtaagtagctatatttagtgaacaattaccatgttgaaca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ataaaattgtcttccataatgtaagtagctatatttagtgaacaattaccatgttgaaca 556
Query: 459 aacataggcaaatatatgagtgttaaaataacatggtaaaggcattatgtggtagatcac 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aacataggcaaatatatgagtgttaaaataacatggtaaaggcattatgtggtagatcac 496
Query: 519 aaatgtaattctcaaaacttgagaagggtgaggcatgaagattgccatagttttgcc 575
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaatgtaattctcaaaacttgagaagggtgaggcatgaagattgccatagttttgcc 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
