Query= MSMg01no501_f20.b1 MSMg01no501_f20.b1 CHROMAT_FILE:
MSMg01no501_f20.b1 PHD_FILE: MSMg01no501_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:11 2005
(586 letters)
>mm_chrX_53511889_53512874
Length = 986
Score = 182 bits (94), Expect = 7e-50
Identities = 182/212 (85%), Gaps = 8/212 (3%)
Strand = Plus / Minus
Query: 311 atttttaaaatctgtttcaaaaactcaaaatgggcagtttttcca-aagaaattaaaatt 369
|||| ||||| ||| ||||||||||| | ||||||| |||||||| || |||| |||||
Sbjct: 733 atttctaaaagctgcttcaaaaactc-acatgggcattttttccagaa-aaatgcaaatt 676
Query: 370 gatagtactttattaactattactaatattgcatactttcaaatgtttacattttctatt 429
|||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||
Sbjct: 675 gatagtactttattaactattactgatatagcatactttcaaatatttccattttctatt 616
Query: 430 gtcaatacagtaaataatcc-agcaattggta-aag-atgaaaatatatcgcctcaagta 486
|||||||||||||| | || |||| ||| | ||| || | ||||||| |||||| |||
Sbjct: 615 gtcaatacagtaaagagccccagcatttg--acaaggattagaatatattgcctcatgta 558
Query: 487 aaaggagatgaagacatggggtaatattttca 518
||| ||||||||| |||||||||||||||||
Sbjct: 557 gaagcagatgaagatatggggtaatattttca 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_f20.g1 MSMg01no501_f20.g1 CHROMAT_FILE:
MSMg01no501_f20.g1 PHD_FILE: MSMg01no501_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:11 2005
(249 letters)
>mm_chr3_25424111_25424765
Length = 655
Score = 354 bits (183), Expect = e-102
Identities = 224/251 (89%), Gaps = 23/251 (9%)
Strand = Plus / Plus
Query: 1 ttggtattgctatccatgccagacacttcacaacttcaattccaggaggatcgtatacct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttggtattgctatccatgccagacacttcacaacttcaattccaggaggatcttatacct 260
Query: 61 tcttct------agcctctattgccattgtacttatgtgcacaggggtacatacatgtac 114
|||||| |||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 261 tcttcttcttctagcctctattgccattgtacttatgtacacaggggtacatacatg--c 318
Query: 115 acacacacacacacacacacacacacacacacacacacaggagagggagacagagacaga 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acacacacacacacacacacacacacacacacacacacaggagagggagacagagacaga 378
Query: 175 ggggaagggaggcacaggggaagaggagggggagggggaggaagaaaatgagagaagggt 234
|||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct: 379 gggg---------------gaagaggagggggagggggaggaagaagacgagagaagggt 423
Query: 235 agaaaacatta 245
|||||||||||
Sbjct: 424 agaaaacatta 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 655
Length adjustment: 9
Effective length of query: 240
Effective length of database: 646
Effective search space: 155040
Effective search space used: 155040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
