Query= MSMg01no502_b05.b1 MSMg01no502_b05.b1 CHROMAT_FILE:
MSMg01no502_b05.b1 PHD_FILE: MSMg01no502_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:01 2005
(618 letters)
>mm_chrX_65305309_65306324
Length = 1016
Score = 1091 bits (564), Expect = 0.0
Identities = 600/612 (98%), Gaps = 2/612 (0%)
Strand = Plus / Minus
Query: 5 gaattctttatttctaactagtaaacacatgttcacttatccaaacaattccaataaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gaattctttatttctaactagtaaacacatgttcacttatccaaacaattccaataaaat 755
Query: 65 ctatgcattataagcaaattttgttaaatttgaagatttgtgtttaatttacagagcaaa 124
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 754 ctatgca-tataagcaaattttgttaaatttgaagatttgcgtttaatttacagagcaaa 696
Query: 125 caaagaaatatgtattgattctaaaacatttttggttatattgatggaagacataaacat 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 695 caaagaaatatgtattgattctaaaacatttttggttatattgatggaaaacataaacat 636
Query: 185 tttatggggacaaatcttatctgaaagataggtaatttctctacagttttattaaaatag 244
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 635 tttatggggacaagtcttatctgaaagataggtaatttttctacagttttattaaaatag 576
Query: 245 gtgttctaatgtcaaggcatttttctatttcaaagaatcacatacttataaacatggtga 304
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 575 gtgttctaatgtcaaggcatttttatatttcaaagaattacatacttataaacatggtga 516
Query: 305 gtttgaaatatatttaaaaagacatttttgtaaagcctgtgcctacccacgcttataaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtttgaaatatatttaaaaagacatttttgtaaagcctgtgcctacccacgcttataaat 456
Query: 365 agtgtgcaaaccacacaagtatattatgtatcatatttctttatgaaaataagcaactca 424
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agtgtacaaaccacacaagtgtattatgtatcatatttctttatgaaaataagcaactca 396
Query: 425 gaatatgcccatgttgctcaatttttaagtttttttaatttttgtgagatttgatttagg 484
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 395 gaatatgcccatgttgctcaatttttaag-tttttaaatttttgtgagatttgatttagg 337
Query: 485 aagtaggtagataatttgaggataactttctctatgggaaatgttaataaacaacattgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aagtaggtagataatttgaggataactttctctatgggaaatgttaataaacaacattgc 277
Query: 545 aaatatgtaatcacatcaaagagcaagtatgacaaatcatgatatttgataatcatagtc 604
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaatatgtaatcacatcaaagaacaagtatgacaaatcatgatatttgataatcatagtc 217
Query: 605 ttcatttttctt 616
||||||||||||
Sbjct: 216 ttcatttttctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1016
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1006
Effective search space: 611648
Effective search space used: 611648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_b05.g1 MSMg01no502_b05.g1 CHROMAT_FILE:
MSMg01no502_b05.g1 PHD_FILE: MSMg01no502_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:01 2005
(626 letters)
>mm_chrX_65280502_65281527
Length = 1026
Score = 1187 bits (614), Expect = 0.0
Identities = 623/626 (99%)
Strand = Plus / Plus
Query: 1 agtaatttataacatttttgctctttctgaggacccaggtttggctgtcaatatccatgt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 agtaatttataacatttttgctctttctgaggacccaggtttggttgtcaatatccatgt 260
Query: 61 ggtaacttacaatcatctataacattagttcaatgagatcaacatctgggcatgcatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtaacttacaatcatctataacattagttcaatgagatcaacatctgggcatgcatata 320
Query: 121 acacataggcaaatactcatacagataaaataaaaatgaatacaagctctgaaaagacaa 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacataggtaaatactcatacagataaaataaaaatgaatacaagctctgaaaagacaa 380
Query: 181 aaattaaagacagtgttactttataaataattggtatctatgtcctctatcttggtttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattaaagacagtgttactttataaataattggtatctatgtcctctatcttggtttta 440
Query: 241 tttttcattttatttatacttttgtgtgttttattttactttttccccattttttactct 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tttttcattttatttatacttttgtgtgttttattttactttttccccagtttttactct 500
Query: 301 ttgatatttaaagattaaagccctttaacttgtttatgaaattactgcttttcaggcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgatatttaaagattaaagccctttaacttgtttatgaaattactgcttttcaggcaaa 560
Query: 361 atctcttacatgtaaagtaaaaataaataattctaaaatattttctggaaatctaatggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctcttacatgtaaagtaaaaataaataattctaaaatattttctggaaatctaatggg 620
Query: 421 caaatttaggttcttatcttaattgaccagtcatttaaatgatagtgttgttttttaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaatttaggttcttatcttaattgaccagtcatttaaatgatagtgttgttttttaaat 680
Query: 481 aattggtatttaaggctttgtcctctgagtgggtgatggtagtacctttaagaggtatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattggtatttaaggctttgtcctctgagtgggtgatggtagtacctttaagaggtatgg 740
Query: 541 cctgcttggaattcttcaaatcattgaggtcgtccctaggaagtggtttgaatatctcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctgcttggaattcttcaaatcattgaggtcgtccctaggaagtggtttgaatatctcaa 800
Query: 601 tccagtttcactcttttaacctttgt 626
||||||||||||||||||||||||||
Sbjct: 801 tccagtttcactcttttaacctttgt 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
