BAC Information

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BAC

Clone NameMSMg01-502E11
ChromosomeX (Build37)
Map Location 17,775,869 - 17,776,187
singlet/doubletsinglet
Overlap geneUtx
Upstream geneEfhc2, Fundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951
Downstream geneLOC100043952, 4930578C19Rik, LOC100043098, EG628855, LOC385333, EG628871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502E11.T7 (MSMg01no502_e11.b1)MSMg01-502E11.TJ (MSMg01no502_e11.g1)
ACCAG577671AG577672
length706758
length of high quality
(start - end)
403 (53 - 455)574 (75 - 648)
definitionCHROMAT_FILE: MSMg01no502_e11.b1 PHD_FILE: MSMg01no502_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:16 2005CHROMAT_FILE: MSMg01no502_e11.g1 PHD_FILE: MSMg01no502_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTTTTCGAAGAGGATCCGCGGAATTCTCATTTACTTA
ATTAAGTTCTTCATGATTGTAGGAAAGATGGATAATATTTGATTTGGAAA
TAGGTTTGATTGTATCAGCAGAGATTACAGTAATAGTTTAGACTTGTAAT
TTATGGAGAGAATTGTCATTTGTTAAAGTGCTCCTTCTTTATTTGATTTG
TCAAATATTGTTACAATTTTGTAATGGGAAAGACATTTATGCTGTAATTA
GTGGAATCACTGATAAATACTTAAAGAATCTATTTCTCTTGAAGAATGAT
ATGTTGAGATATAAGAAAAAAATATTGATTTCCTGGAGAGAGGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAAAATGTGTATATGTGTGTGAATAATCTTATGGAGGAAATGTATT
TTTAAGATTGTTANNTATGNTTTAAAATAAAATTTTTGTTTATTTTTTTT
AAAATGGTGATTTTTTTTAGAAATATTTAATAATATAAGGTGAGAGTAAT
ATGGTTTATGGATATTTTTGTAGTGTTGGTTAATTTTTNGTTTTGTTGGT
AATATATGTATGAGTAGAATGGTTTTTTTTTTTTTTTTTTTAGTGATGTT
GTATTATTTTTATTTATTGTGGTATTTTGGATTATGGATTTGTGTTTGTG
GGGGTG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTCAAGTTTTTTTTTTAAAGGATC
AGCATAAGTATGAAGTACCTCCAGGAGCCTACCAAAGCACAAAGAATCAA
GAGAGCTGGATAGATGGCTCTGCAATTAATAGCACTGGCTGCTCTTCCAG
AGGACATAGGTCTGATTTGTAGCATTCACATGGTATCTCTAGACTTTTTT
TTTAAATTTAATTTTATTTTTTTACTTACTCACTTTTCATCCTTCTCTCT
GCCCCCTCCCAGTCACTCTCCCACAACACTTCCCCCCTCCCATGTCCCAT
CTCCTCTGAGCAGCCACACATGCACACACCCAGGTATCTCCCTGGCACTT
CCAGTCTCTGCAAGGCTAGGCACATCCTCTCCCACTGAGGCCAGACAAGA
CAGCCCAGCTAGAAGAGCATATCCCATAGACAGGCATCAGCTTTTGGGAT
AGTCTTTGTTCCAATTGTTCAGGACCCACAAGAAGACCAAGCACATAAGA
GTGGGGAGGCCTAGATTCAGCCCCTGTATGCTTTTTGGTTGGTAGTTCAG
TCTCTGAGATCCCCCAAGAGTCCATGTTAGTTGACTCTATTGGTCTTCCT
GTGGAATTCCTACCCCATTCAGGGCTGCAATCCTTCCTCCTATTCTTCCT
TGGGGTCCCAAGCTCCACCATTGGTTGGGCTGTGGCTGTCTTTACAATTA
GACATGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_e11.b1 MSMg01no502_e11.b1 CHROMAT_FILE:
MSMg01no502_e11.b1 PHD_FILE: MSMg01no502_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:16 2005
         (403 letters)



>mm_chrX_17775669_17776471
          Length = 803

 Score =  596 bits (308), Expect = e-174
 Identities = 317/320 (99%), Gaps = 1/320 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagttcttcatgattgtaggaaagatggataatatttgatttggaaataggtttgattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagttcttcatgattgtaggaaagatggataatatttgatttggaaataggtttgattg 260

                                                                       
Query: 61  tatcagcagagattacagtaatagtttagacttgtaatttatggagagaattgtcatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcagcagagattacagtaatagtttagacttgtaatttatggagagaattgtcatttg 320

                                                                       
Query: 121 ttaaagtgctccttctttatttgatttgtcaaatattgttacaattttgtaatgggaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaagtgctccttctttatttgatttgtcaaatattgttacaattttgtaatgggaaag 380

                                                                       
Query: 181 acatttatgctgtaattagtggaatcactgataaatacttaaagaatctatttctcttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 acatttatgctgtaattagtggaatcactgataaatacttaaagaatctatttgtcttga 440

                                                                       
Query: 241 agaatgatatgttgagatataagaaaaaaatattgatttcctggagagaggagagagaga 300
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 agaatgatatgctgagatataagaaaaaaatattgatttcctggagagag-agagagaga 499

                               
Query: 301 gagagagagagagagagaga 320
           ||||||||||||||||||||
Sbjct: 500 gagagagagagagagagaga 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)