GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTCTTTCTGA
CTGCTCTTTAAGTAGCTTCTCTTACCTGACTGTTCTCCCAAGAGTTGAGA
TAGGGATCTCTGATTCATTCTGTCAAATCATTCTTTTATTCCTCACATGT
TTTGCTCCTCAACTTGAGGTCATCGGGATTAAAACTGTGTACTGAAGGTG
TGTCTGCATTATAGCCAGAGGAATCAAAGGTATATATTCCAGCCAGAGGG
ATTAAAAGTGTGTGGTATGACTGCATTCCAGGTTGATCATGACTTTGGAT
GTGATCTTTTTCCAGAGAAGCCATGTTGATGGATTAAAATTATTCTACAG
CTATTGTAGGAAGGTGCCAGGATAATAAAAATATTCATGAATAAGAAAGA
AGTTCATATTTCCACAAGTGACTGCAGGAAGTTGAAAACATCCCCAGGTC
CCCAGAGAACTCAGATGCTTGGTTTTTAAGTTCAGTGATTAGGAAGAGTT
CATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGANGAGAGAGTCTGTTCATGACATTTCAGGCAAGTAAA
GCATCCTTTCAGTTCATTCTTTGCTGCTGGATTTTAATTGCCTAAACTTA
ATAGTCCTCGTCTGAACTAAAAGGTTGAATTCTATTATTCAGAATTGCAT
ATTTAAGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGCGAA
ATTCTTGTCCACCTGATTACCAAAACTCTGGTTCCCCATGGGTTGAGACA
GACTGAGTCCAGTCTGCAACAGACCTGGGCATGTTATAGTGCCTGGGAGT
GAAGCTTTTTTTTTTTTTTTTTTTTTTTTTGGTGTCATGAGACTGGCTAC
AGAGTTAGTGTCTAAGGTCTGCTCAGGGTACCTCTGACACTATGTTTCTG
GGCAAGTTAAAGTGTCTGGGAGTGGAAGTTTCTACTGGATTTTGTTTTTT
TTGGNNGGGGAGTTCTCAAGGGACTGGCCCAAAAACTGGAATAACCCCCT
GCCCCTGGGTGGGCCCAAATTCTTGGGGGCCCAAAACCCCGTGGGGCCCC
CATTAATTTTTTGGGGTTAAGGGAAAAAAGGGGGGCCCCTCCCAACCCGG
AATTCTAAAAACCCCGGGGGGAAAAAAAGGGTTTTCACATTTAAAAAACC
TCCGCCTTTGGGGGATTTTTTTAAAAAACCCCCCCTATTTCCCGCGGAGA
AATTTTTTTTTCCCCCCCAAAAAATTTTTCTTTTTTTTCCTCTCGGGGGG
GGG

Query= MSMg01no502_f05.b1 MSMg01no502_f05.b1 CHROMAT_FILE:
MSMg01no502_f05.b1 PHD_FILE: MSMg01no502_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:20 2005
         (627 letters)



>mm_chrX_127517915_127518941
          Length = 1027

 Score = 1143 bits (591), Expect = 0.0
 Identities = 613/623 (98%), Gaps = 7/623 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctttctgactgctctttaagtagcttctcttacctgactgttctcccaaga 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 gaattctctctccctgactgctctttaagtagcttctcttacctgactgttctcccaaga 932

                                                                       
Query: 65  gttgagatagggatctctgattcattctgtcaaatcattcttttattcctcacatgtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gttgagatagggatctctgattcattctgtcaaatcattcttttattcctcacatgtttt 872

                                                                       
Query: 125 gctcctcaacttgaggtcatcgggattaaaactgtgtactgaaggtgtgtctgcattata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gctcctcaacttgaggtcatcgggattaaaactgtgtactgaaggtgtgtctgcattata 812

                                                                       
Query: 185 gccagaggaatcaaaggtatatattccagccagagggattaaaagtgtgtggtatgactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gccagaggaatcaaaggtatatattccagccagagggattaaaagtgtgtggtatgactg 752

                                                                       
Query: 245 cattccaggttgatcatgactttggatgtgatctttttccagagaagccatgttgatgga 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 751 cattccaggttgatcatgactttggatgtgatctttttccatagaagccatgttgatgga 692

                                                                       
Query: 305 ttaaaattattctacagctattgtaggaaggtgccaggataataaaaatattcatgaata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttaaaattattctacagctattgtaggaaggtgccaggataataaaaatattcatgaata 632

                                                                       
Query: 365 agaaagaagttcatatttccacaagtgactgcaggaagttgaaaacatccccaggtcccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agaaagaagttcatatttccacaagtgactgcaggaagttgaaaacatccccaggtcccc 572

                                                                       
Query: 425 agagaactcagatgcttggtttttaagttcagtgattaggaagagttcattgagagagag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agagaactcagatgcttggtttttaagttcagtgattaggaagagttcattgagagagag 512

                                                                       
Query: 485 agagagagagagagagagagagagagagagagagagagagagagagagagangagagagt 544
           ||||||||||     | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 511 agagagagag-----g-gagagagagagagagagagagagagagagagaga-gagagagt 459

                                                                       
Query: 545 ctgttcatgacatttcaggcaagtaaagcatcctttcagttcattctttgctgctggatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctgttcatgacatttcaggcaagtaaagcatcctttcagttcattctttgctgctggatt 399

                                  
Query: 605 ttaattgcctaaacttaatagtc 627
           |||||||||||||||||||||||
Sbjct: 398 ttaattgcctaaacttaatagtc 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)