BAC Information

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BAC

Clone NameMSMg01-502P10
ChromosomeX (Build37)
Map Location 107,482,076 - 107,482,400
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042831, LOC213474, LOC245573
Downstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P10.T7 (MSMg01no502_p10.b1)MSMg01-502P10.TJ (MSMg01no502_p10.g1)
ACCAG578192AG578193
length745745
length of high quality
(start - end)
325 (313 - 637)417 (323 - 739)
definitionCHROMAT_FILE: MSMg01no502_p10.b1 PHD_FILE: MSMg01no502_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:07 2005CHROMAT_FILE: MSMg01no502_p10.g1 PHD_FILE: MSMg01no502_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCTGAAANAGAACCCCCTTTTCAAACGGGGCCGNGGAANNCANCATT
TACGAAACACAGTGACTTAAGACTTTCATTATCATGTCACTTCTGAACAA
TATTATAAGAGGGAAACAAATTGTCAATACATGAGCCATGGACAAAACTT
TCTACTCAAACGATAACATTTTCCCCTTCAGAAAATAGAAGTAATTTATT
TAAAAACACATAGAAGCCCAGTAACACATTCCATTTTCTTACTCTTAGTT
TGAGTTCCTGCAAAACTCAGAGAATAGTCTAGCAAGTGTTGCAATTACAG
GTTTTGGTGGNAGTAATATAAAAATAATGTTTAGAGAAAGACCACTTAAA
CTTTCCTTAGAGAAACTGGCACATTAGCACTCACATGCAATCACATAACT
CTAGAGGCTGTGGCAGTAAGATCAGGAGTCTGAAGTCAGCCTGCACTAAA
AGAATGTCCAAGCATGCTTAAATTAAAGAGAAAGAAATTGCTTCAAACAA
ACAAAAAACTCAAATCTTTCTCTAAAGTGTGTTATTGATCCTAAAATACG
ATTTTAGACAGTTTCTTAGTCATCATTCTCTTTGAACCATGTCTGAAATT
TTTTCTAAGTAACATCCCAAAGATCTTTCTTTCTTGTTACCCTGTCACAC
TTTTTCATGGTTTCTACAACTTAAAAAATGAATTTTGTTTGTGTGTTGGG
ACTGAAGAGCTTATCACTGTGCCATTCTAGAAGGTGCTGACATCA
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAACAGTAGGNNGA
ACTANAGAATGTCACACACCATTCAAAACAAAGGAATCTCGAATGGCTGA
GAAACACCTAAAGAAATGTTCAAAGTCAGAGAAATTCAAATCAAAATGAC
CCTGAGATTCCACCTCACACCAATCAGAATGGCTATGATCAAAAATGCAG
GTGACAACACATGTTAGAATGTGGAAAAAGATGAACACTCCTCCATTGCT
GGTGGGATTGCAAACTGGTACAACCACTCTGGAAATCAATCTGAAGGTTC
CTCAGAAAATTGGATTATTATTTACCTGAAGACCTAGCAATACCAGTCTT
GGGAATATACCCAAAAGATGACCCACCATGCCACAGGGGCAGGAGTTCCA
CTATATTCATAGCAGTCTTATTTGTGATAGCCAGAAGCTGGAAACAACCC
AAATATCCCACAGTAGAAGAATGGATACAGAAAATGTGGTTCATTTACAC
AGAAAATGGGGTTCATTTTACACAGTGGAATACTACTCAGCTATTAATAA
TGAAGGCATCTTGAGTTTTGCAGGCAAATTGAAGGACCTAAAAAATATCA
TCCCGAGTGAAGTAATTCAGAGCCAAAATGATTTGCATAGTATGTACTCA
GTAATAAGTAGATATTAGCCTAAAAAAAAAGAAAAGAAAGAAAAAAAAAG
AAAAAGAGAAAAATACCGCCCACAGAACTAAAAAATTTCAACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p10.b1 MSMg01no502_p10.b1 CHROMAT_FILE:
MSMg01no502_p10.b1 PHD_FILE: MSMg01no502_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:07 2005
         (325 letters)



>mm_chrX_107481876_107482600
          Length = 725

 Score =  629 bits (325), Expect = 0.0
 Identities = 325/325 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaatataaaaataatgtttagagaaagaccacttaaactttccttagagaaactggcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaatataaaaataatgtttagagaaagaccacttaaactttccttagagaaactggcac 260

                                                                       
Query: 61  attagcactcacatgcaatcacataactctagaggctgtggcagtaagatcaggagtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagcactcacatgcaatcacataactctagaggctgtggcagtaagatcaggagtctg 320

                                                                       
Query: 121 aagtcagcctgcactaaaagaatgtccaagcatgcttaaattaaagagaaagaaattgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtcagcctgcactaaaagaatgtccaagcatgcttaaattaaagagaaagaaattgct 380

                                                                       
Query: 181 tcaaacaaacaaaaaactcaaatctttctctaaagtgtgttattgatcctaaaatacgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaacaaacaaaaaactcaaatctttctctaaagtgtgttattgatcctaaaatacgat 440

                                                                       
Query: 241 tttagacagtttcttagtcatcattctctttgaaccatgtctgaaattttttctaagtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagacagtttcttagtcatcattctctttgaaccatgtctgaaattttttctaagtaa 500

                                    
Query: 301 catcccaaagatctttctttcttgt 325
           |||||||||||||||||||||||||
Sbjct: 501 catcccaaagatctttctttcttgt 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)