Query= MSMg01no503_e06.b1 MSMg01no503_e06.b1 CHROMAT_FILE:
MSMg01no503_e06.b1 PHD_FILE: MSMg01no503_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:30 2005
(546 letters)
>mm_chrX_130357206_130358151
Length = 946
Score = 940 bits (486), Expect = 0.0
Identities = 532/556 (95%), Gaps = 14/556 (2%)
Strand = Plus / Plus
Query: 1 caaagaaatcaaaagactaaacataaagcaaacaacccaatttaaaaatggagcataaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 caaagaaatcaaaagactaaacataaagcaaacaacccaatttaaaaatggagcatagaa 260
Query: 61 ctaagcagagttgattcctttatttccaaacttgggttattttgttgttgctgttgtttg 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaagcagagttgtttcctttatttccaaacttgggttattttgttgttgctgttgtttg 320
Query: 121 cttacgggttcttcttcttctggtctcttaaatttccagaaatgtttaaattcactgtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttacgggttcttcttcttctggtctcttaaatttccagaaatgtttaaattcactgtac 380
Query: 181 tattcactttctcttttcatcttttccaacattcgaggtacaaatttaaacctccagtga 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tattcactttctcttttcatcttttccaacattcgcggtacaaatttaaacctccagtga 440
Query: 241 cagtattgtgtcatatctagagtcgtgaggcaaaggagccccatagaagcacccaacctc 300
||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 caggaatgtgtcatatctagagtcatgaggcaaaggagccccatagaagcacccaacctc 500
Query: 301 taaggctactgccaaggctatatggttattccccatagactgatggtagggccctattgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaggctactgccaaggctatatggttattccccatagactgatggtagggccctattgc 560
Query: 361 tgaaaacaatacttgcatatctcatt--------------agagctggtggcttcactcc 406
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tgaaaacaatacttgcatatctcattgaacatgggaatgtagagctggtggcttcactcc 620
Query: 407 tactcactggcattcatggtattggcatgtattctgaagtcaattattcagctacaaacc 466
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactcactggcatttatggtattggcatgtattctgaagtcaattattcagctacaaacc 680
Query: 467 ctgtgaactacgtcagcgatctgcctgcaagttatgttggtacatacattggcacaaaca 526
|||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtgaactatgtcagtggtctgcctgcaagttatgttggtacatacattggcacaaaca 740
Query: 527 ctgcaagagtaaccaa 542
||||||||||||||||
Sbjct: 741 ctgcaagagtaaccaa 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_e06.g1 MSMg01no503_e06.g1 CHROMAT_FILE:
MSMg01no503_e06.g1 PHD_FILE: MSMg01no503_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:30 2005
(482 letters)
>mm_chrX_130513559_130514445
Length = 887
Score = 888 bits (459), Expect = 0.0
Identities = 478/487 (98%), Gaps = 5/487 (1%)
Strand = Plus / Minus
Query: 1 tctggatgggcacctgatttaacttcttcctttccagatggccagaggggaaacaatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tctggatgggcacctgatttaacttcttcctttccagatggccagaggggaaacaatggc 628
Query: 61 gtagcagctgacaggtttttgacagaaatatgtgtatgtgacaaagccacaccaggcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtagcagctgacaggtttttgacagaaatatgtgtatgtgacaaagccacaccaggcaga 568
Query: 121 cagagtgatagcacaccctttttatttgtagcttcagcagagatactcaggagagtatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagagtgatagcacaccctttttatttgtagcttcagcagagatactcaggagagtatat 508
Query: 181 cttcctcaagcccacctctggaactttgtttaaactactggttgt-----cccccccccc 235
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 507 cttcctcaagcccacctctggaactttgtttaaactactggttgtccccccccccccccc 448
Query: 236 ccggtcttcttggtactcatatccccaacctcttgtcattaactcttattcatctctcaa 295
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccggccaacttggtactcatatccccaacctcttgtcattaactcttattcatctctcaa 388
Query: 296 gatttctcctaacatcattgcctttgaggcaagctcactgaatgcatacttccttctccc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gatttctcctaacatcattgcctttgaggcaagctcactgaatgcatacttccttctccc 328
Query: 356 aaggagaatgactacttatattgtcttgaaggactttatttagacttcaataaaggcctg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaggagaatgactacttatattgtcttgaaggactttatttagacttcaataaaggcctg 268
Query: 416 aataccattctgtttttccatctggaaggttgtaatccctgtaaaggaagtaactggatc 475
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 267 aataccattctgtttttccatctggaaggttgtaatctctgtaaaggaagtaactggatc 208
Query: 476 ttgaagc 482
|||||||
Sbjct: 207 ttgaagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 887
Length adjustment: 10
Effective length of query: 472
Effective length of database: 877
Effective search space: 413944
Effective search space used: 413944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
