Query= MSMg01no503_m09.b1 MSMg01no503_m09.b1 CHROMAT_FILE:
MSMg01no503_m09.b1 PHD_FILE: MSMg01no503_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:09 2005
(237 letters)
>mm_chrX_165117456_165118092
Length = 637
Score = 441 bits (228), Expect = e-128
Identities = 234/236 (99%)
Strand = Plus / Plus
Query: 1 gtgaaattctgtctcgtgtaaacaagcaaacaaataacccaactgaacatttgctgaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgaaattctgtctcgtgtaaacaagcaaacaaataacccaactgaacatttgctgaact 260
Query: 61 aacactttcaagtgtgtcactatagaaatccatatggaaacaacaacaacaaaaacctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacactttcaagtgtgtcactatagaaatccatatggaaacaacaacaacaaaaacctat 320
Query: 121 aacacaaacagtatagtaatgacatcaggtctttggggcatacaggcccttccttggtgt 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 aacacaaacagtatagtaatgacatcaggtctttggggcataccggcccttccttggtgt 380
Query: 181 caacgtaggagaatgctctggtgagttagtctggtataccgggaacaccttaactg 236
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 caacgtaggagaatgctctggtgagttagtctggtataccgggaacaacttaactg 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no503_m09.g1 MSMg01no503_m09.g1 CHROMAT_FILE:
MSMg01no503_m09.g1 PHD_FILE: MSMg01no503_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:09 2005
(502 letters)
>mm_chrX_165228463_165229367
Length = 905
Score = 764 bits (395), Expect = 0.0
Identities = 460/501 (91%), Gaps = 33/501 (6%)
Strand = Plus / Minus
Query: 1 ttcgagggttgacagggaggaggcaacagttggaatggatgtaaataaataaataaataa 60
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttcgagggttgacagggaggaggcaacagttggaatggatg------------------- 436
Query: 61 ataaataaataaataaataaataatcctaagggaagattcctacctttagaatggtcgtt 120
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 435 -taaataaataaacaaataaataaccctaagggaagattcctacctttagaatggtcgtt 377
Query: 121 ctgagtgtatagagtt---cactggaaccttaatctagtgtgtggtgtttttgttagttc 177
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ctgagtgtatagagttcaccactggaaccttaatctagtgtgtggtgtttttgttagttc 317
Query: 178 agtatagtaagtgtgattgctatggtattctatatctttacttccagcactcaggaggta 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 316 agtatagtaagtgtgattgctatggtattctatatctttacttccagcactcaggaggca 257
Query: 238 ta-----tttttatggatcattttgggttccagacctgctagggagacacagtgagaccc 292
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gaggcag-----atggatcattttgggttccagacctgctagggagacacagtgagaccc 202
Query: 293 tgtcttaacaacaataactggtaataatacatttattaaaagagtattttaaaatatatt 352
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||
Sbjct: 201 tgtcttaacaacaataactggtaataatacatttgttaaaagagtatttttaaatatgtt 142
Query: 353 cttttctacctgagtattaagtttatgttgcagtcctcataaagtatggtatcatcattc 412
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 141 cttttctacctgagtattaagtttgtgttgcagtcctcataaagtatggtatcatcattc 82
Query: 413 ttactcagagcatacaatttttctcttctgactctttttgctcatccagtctcaagtcct 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 ttactcagagcatacaatttttctcttctgactctttttgctcatccagtctcaagtcct 22
Query: 473 attgcccactctggttaaatg 493
|||||||||||||||||||||
Sbjct: 21 attgcccactctggttaaatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 905
Length adjustment: 10
Effective length of query: 492
Effective length of database: 895
Effective search space: 440340
Effective search space used: 440340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
