BAC Information

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BAC

Clone NameMSMg01-504F17
ChromosomeX (Build37)
Map Location 79,632,306 - 79,632,613
singlet/doubletsinglet
Overlap genenone
Upstream gene4930595M18Rik, EG667799
Downstream geneEG629310, Dmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504F17.T7 (MSMg01no504_f17.b1)MSMg01-504F17.TJ (MSMg01no504_f17.g1)
ACCAG579256AG579257
length780801
length of high quality
(start - end)
639 (67 - 705)558 (77 - 634)
definitionCHROMAT_FILE: MSMg01no504_f17.b1 PHD_FILE: MSMg01no504_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:56 2005CHROMAT_FILE: MSMg01no504_f17.g1 PHD_FILE: MSMg01no504_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCCCTTACGCAAACACCAAACCCAGACACTATTGCTGACATCAG
GAAGTGCTCGATGATAGGAGCCCAGTACAGCTATACCCTGAGAGGTTTCT
GCCATTTCCTTACCAATAGGGATGTGGATGCTCACAGACAACCAATCAGT
CTGAGCCTGGGGACCCCAATCAAAGTGTTAGGGGAAGGACTGTAGGAGCT
GAAAATGATTGCAACCCCATAGGAAGAACAACAATATCAACTAACTAGAC
TTCTCAGAGCTCTCAGACACTAAAGGACCAACCAAAGAGTGCACATGGAG
TAGCACAATGCCTCCAGCTGCGTATGTAGCAGAGGAGTGCCTTATCTGGC
ATCAATTGGAAGTGAGATCCTTGATGCCTCAGCATAGGGAGATGCTCCAG
GCAGTGAGGCAGAAATAGGTGTGCGGGTGGGGAAACACCCTCATAGAGGC
AGAAGGAGGGCGGTGGGATGGGGGTTTTGGAGGGGGAGACATGAAGGGGG
ACAACAATGTAAATGCAATGTAAATAAATAAAATAACTAATAAAAAAGAC
AAGACTATTTGTATTCGAATGAGAGAACAGAATGAGTATGTGCACAGATA
GGAAGAGTTATGTTAAGGAACAGCGAAGATAGTGGGAGGGAACACCTTAA
TGGGTCATATTAGGTGAGAAAAAATATTTTTAATTGAAAAACAAAAGAAA
TGTAATGTTCCCTTGGATTTTTTTCCTTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGATACAATTTGCAAAACACA
ATAAAATTGAGAAGAAGGAAGACCAATGTGTGGATACTTCTTTCCTATCT
AGAATAGGAAATAAAATACCAATGGTAGGACTTACAGAGACAAAGTTTGA
AACTAAGATGAAAGGATGGACCATCCAGAGACTGCCCCACCCTAGGGTCC
ATCCCATAATCAGCCACCAAATGCAGACACTATTTCATATGTAAGCAAGA
TTTTGCTGAATGGACCCTGATATTTCTGTCTTTTGTGAGCCTATGCCAGA
GCCTGGCCAATATACAAGTGGAGGCTCACAGTCATTTTTACGATGGAACA
CAGGGCCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGG
TGGAACAAAAATATGAACTAACCAGTACCCCCCAGAGCTCGTGTATTCAT
TGGGAATAGAAGCCCCTTGGTCTTGCAAACTTTATATGCCCCAATACAGG
GGAACACCAGGGCCAAGGATTGGGAGTGGGTGGGTAGGGCAGTGGGGGCG
AAGGGTATGTGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAA
TATCTAATAAAAATTTTAAAATAAAAGTTTGTATTGATTATTACATTCAA
TCAATTTAACTTTAAATACTATAAAACTTAAGCTCACAATAAAAATTTGC
TTTATTGCATGGGAAAACTATTATCCCAGATATTTTGTTTTAATTTCTCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_f17.b1 MSMg01no504_f17.b1 CHROMAT_FILE:
MSMg01no504_f17.b1 PHD_FILE: MSMg01no504_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:56 2005
         (639 letters)



>mm_chrX_79631575_79632613
          Length = 1039

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Minus

                                                                        
Query: 332  ggcatcaattggaagtgagatccttgatgcctcagcatagggagatgctccaggcagtga 391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 ggcatcaattggaagtgagatccttgatgcctcagcatagggagatgctccaggcagtga 980

                                                                        
Query: 392  ggcagaaataggtgtgcgggtggggaaacaccctcatagaggcagaaggagggcggtggg 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  ggcagaaataggtgtgcgggtggggaaacaccctcatagaggcagaaggagggcggtggg 920

                                                                        
Query: 452  atgggggttttggagggggagacatgaagggggacaacaatgtaaatgcaatgtaaataa 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919  atgggggttttggagggggagacatgaagggggacaacaatgtaaatgcaatgtaaataa 860

                                                                        
Query: 512  ataaaataactaataaaaaagacaagactatttgtattcgaatgagagaacagaatgagt 571
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  ataaaataaccaataaaaaagacaagactatttgtattcgaatgagagaacagaatgagt 800

                                                                        
Query: 572  atgtgcacagataggaagagttatgttaaggaacagcgaagatagtgggagggaacacct 631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  atgtgcacagataggaagagttatgttaaggaacagcgaagatagtgggagggaacacct 740

                    
Query: 632  taatgggt 639
            ||||||||
Sbjct: 739  taatgggt 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)