Query= MSMg01no505_c09.b1 MSMg01no505_c09.b1 CHROMAT_FILE:
MSMg01no505_c09.b1 PHD_FILE: MSMg01no505_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:59 2005
(698 letters)
>mm_chrX_92274878_92275974
Length = 1097
Score = 1185 bits (613), Expect = 0.0
Identities = 687/741 (92%), Gaps = 50/741 (6%)
Strand = Plus / Plus
Query: 5 gaattcatatttatctcatttatttcctatcacttttcatccagtcttctacttcagaga 64
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gaattcatatgaatttcatttatttcctatcacttttcatccagtcttctacttcagaga 217
Query: 65 ctactctggctgtttcatttcagacatttctatcaggctaagtctctaacactctaaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ctactctggctgtttcatttcagacatttctatcaggctaagtctctaacactctaaaaa 277
Query: 125 ctcttgtttggggcatcttaatatagctcctgagacctgaaaaaaatagtctttctgtgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctcttgtttggggcatcttaatatagctcctgagacctgaaaaaaatagtctttctgtgg 337
Query: 185 ctttgtcttttgtctttatcctcttcttccttgggcatattgctactcctgtctgtcttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctttgtcttttgtctttatcctcttcttccttgggcatattgctactcctgtctgtcttt 397
Query: 245 agctcacagtcatgagaccaggtatccttacgttaagtggtagatgtctaataaggaaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agctcacagtcatgagaccaggtatccttacgttaagtggtagatgtctaataaggaaat 457
Query: 305 attggaagttgatgtagaaattgccaaataatctgtgaccatgagccttcatcattggaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 attggaagttgatgtagaaattgccaaataatctgtgaccatgagccttcatcattggaa 517
Query: 365 atagatgaggaagcgataagcctccagattgattatccaacaccaaacaattagccatag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 atagatgaggaagcgataagcctccagattgattatccaacaccaaacaattagccatag 577
Query: 425 aaacacatgttcaggcaacaaacatacaatggatccataca-------atgt-tatatat 476
||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct: 578 aaacacatgttcaggcaacaaacatacaatggatccag-caggaggatatgtatatatat 636
Query: 477 atatatatatatata-----------------aca-----------------------ag 496
||||||||||||||| ||| ||
Sbjct: 637 atatatatatatatatatatatatatatatatacatatatatatatatatatatatcaag 696
Query: 497 aatcattaaaaaagaaggggacatgtgggagcagaggaaaagacattaagaagggtaagg 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aatcattaaaaaagaaggggacatgtgggagcagaggaaaagacattaagaagggtaagg 756
Query: 557 gggagggggaggagatagagtagggaaaatgatgtgcttatattttattttaaaatatgt 616
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 757 gggagggggaggagatagagtagg-aaaatgatgtgcttatattttattttaaaatatgt 815
Query: 617 caggatgaaagcttggggaatttgagcaagggacttatttcttcttatgagggtataggg 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 caggatgaaagcttggggaatttgagcaagggacttatttcttcttatgagggtataggg 875
Query: 677 gacttttgggatagcatttga 697
|||||||||||||||||||||
Sbjct: 876 gacttttgggatagcatttga 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1097
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1087
Effective search space: 747856
Effective search space used: 747856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_c09.g1 MSMg01no505_c09.g1 CHROMAT_FILE:
MSMg01no505_c09.g1 PHD_FILE: MSMg01no505_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:59 2005
(644 letters)
>mm_chrX_92287901_92288944
Length = 1044
Score = 961 bits (497), Expect = 0.0
Identities = 500/501 (99%)
Strand = Plus / Minus
Query: 144 gttttctcattttctcattgttagttgtttatacttgttcttttaattcatttgactcct 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 gttttctcattttctcattgttagttgtttatacttgttcttttaattcatttgactcct 985
Query: 204 ttcaaagaattagtttggattcctttttcattaattaatatgtttacaccccaatcgcag 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ttcaaagaattagtttggattcctttttcattaattaatatgtttacaccccaatcgcag 925
Query: 264 cttcccctccctcctctcctcctggtccctccctcttaccttcctccccaccccccaatc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 cttcccctccctcctctcctcctggtccctccctcttaccttcctccccaccccccaatc 865
Query: 324 cctttcttctcagagaagggtagccaggtagaatgcgtttgggcagtagatgcagtgtca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cctttcttctcagagaagggtagccaggtagaatgcgtttgggcagtagatgcagtgtca 805
Query: 384 caatgaatcctgtctgggatggtgcagtgatttcatggctgagtgaaaagactatattgt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caatgaatcctgtctgggatggtgcagtgatttcatggctgagtgaaaagactatattgt 745
Query: 444 taattcagtatactatattgacaacaagagctgtggaacctgcacagaggctttgagaca 503
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 744 taattcagtatactatattgacaacaagagctgtggaacctgcacagaggctctgagaca 685
Query: 504 ttggggtccttatctatacaagtgtgtctatcagctagatatcactgtgaaattcaatgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttggggtccttatctatacaagtgtgtctatcagctagatatcactgtgaaattcaatgg 625
Query: 564 tagtgagtttgcctgaaaggccacttttagacatgtgcatggtggcagagacaaactgtt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagtgagtttgcctgaaaggccacttttagacatgtgcatggtggcagagacaaactgtt 565
Query: 624 ttgttttgttttttttcaaag 644
|||||||||||||||||||||
Sbjct: 564 ttgttttgttttttttcaaag 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
