BAC Information

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BAC

Clone NameMSMg01-506A15
ChromosomeX (Build37)
Map Location 165,046,016 - 165,046,320
singlet/doubletsinglet
Overlap genenone
Upstream geneFrmpd4, EG667822, EG637566
Downstream geneMsl31, Arhgap6, Amelx, Hccs, LOC100040950, BC022960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506A15.T7 (MSMg01no506_a15.b1)MSMg01-506A15.TJ (MSMg01no506_a15.g1)
ACCAG580529AG580530
length755764
length of high quality
(start - end)
327 (329 - 655)305 (76 - 380)
definitionCHROMAT_FILE: MSMg01no506_a15.b1 PHD_FILE: MSMg01no506_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:05 2005CHROMAT_FILE: MSMg01no506_a15.g1 PHD_FILE: MSMg01no506_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGAGGTGCGCGGN
AANCNAAGACATTGCAATTACTAGCGACCCCCCGGTGTGGCACCCTGGAC
GCCACTGGAGACCGAGGAATCATAACAGGGGCCCTGATCCTTAGGAGTGT
TTCCTCGCTTAAGGGAAATTAGGTCCCATGATGATGATGGCTTCCAGTAT
GCCTGTCCAGTGGTCTCACATCCCCATTTGCCACAGTAGCCCTCTCCCGG
CCTTCTTCACCCTATTGGTACAGTATGACCGGGGCAAACATAGAAGTCAT
ACAGTCTTGTCCTTCTTCTTCCCTCTTTAGTGCGGCAACCATCCCCAATA
TCGGGTTCTGTGTCATCCCAGTAGTCTCCTACTAAATCACACAGGTCAAA
ATATAGTTTAGGGAAGGTGTCTGTCATCGTCCCCAGGAGGGAGGTGGCGT
TAGCTGTTTGTCCTGTCATTAGGTTGGTAACTCTCCAAGTAACATTGAAG
ATCTGGTGAGGGCTGTCACGTTGTACCGAGGCTCCTGCCCTCACCAAGAT
CCCCATAACTATTAGGGGGCCCCACGGGTTAATCTTATCTTTAAGGGGTT
TTGAGAACGCTGGACCTTCCATGTTGTTCCGGCTGGAGGAGTTGTCGCCG
CCTTTACTTGTTCGGCGTGTATCCACGCAGAGATGCCGTCTACTTTGAGA
GCGGTGGGGGTGGTCAGCAGGACGGTGTAGGGTCCTTTCCAGCGGGTTTC
TAGTT
CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGAACATGTAGGTGGGCTGTTCA
TGTGCTATTTGCCTTCCTACTGTCAAGGACACTCTTTGCCCTCCCTCATG
CTCTCATATATCTTGCCGCACTCCATTCTATGACAGCCCACAGAAACATA
GTCTGAAATCTCAGGTTCCCATTATCATAGTCTACTTATTTAGTGGAAGG
TGAACAGGCATAGTCATGGCTGTGGAAATAGTTCAGGTGTGAAGTTCTTG
CCTTGTAGGAATGGAGAAATGATTTAAGTCTCTACAGCCCGGTGGGAGTG
AGGGGGTAGGGGAGTAGTATGCATTTGTTTGTGATGCCAGGATTGGGAAG
GTAGAGACAGGCACATTCCTGGGGCTTGCTGACAAGCCAGCCTACTGTTT
AACAATATTTCAGATAGTTGACCCCATCTCAAAACCGAAAACAAAAAGTA
ACAAAGGTAGACAGCGCCTAAGCAGCCATACCTAACATTGTCTATTTTAT
GGTCTATGCTGTTTGATTCCTGTCTCTGCTAACAGCAACGTCAAGATATT
TTTCTCTGATCTCCTCATAGAACTTTACAGTTTTTGGTTTTGTGGGTAGG
TCTATGATAGAAGTTTTTCTTTGCCCCTTTATATAAATAGTCATTAAAGG
CAAGAAAAATTCTTTGTCATATATACTGCCCCTTTGTTAGACCAATGTTC
TGCTTAAACACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_a15.g1 MSMg01no506_a15.g1 CHROMAT_FILE:
MSMg01no506_a15.g1 PHD_FILE: MSMg01no506_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:05 2005
         (305 letters)



>mm_chrX_165045816_165046520
          Length = 705

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggaacatgtaggtgggctgttcatgtgctatttgccttcctactgtcaaggacactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctggaacatgtaggtgggctgttcatgtgctatttgccttcctactgtcaaggacactct 446

                                                                       
Query: 61  ttgccctccctcatgctctcatatatcttgccgcactccattctatgacagcccacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgccctccctcatgctctcatatatcttgccgcactccattctatgacagcccacagaa 386

                                                                       
Query: 121 acatagtctgaaatctcaggttcccattatcatagtctacttatttagtggaaggtgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatagtctgaaatctcaggttcccattatcatagtctacttatttagtggaaggtgaac 326

                                                                       
Query: 181 aggcatagtcatggctgtggaaatagttcaggtgtgaagttcttgccttgtaggaatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcatagtcatggctgtggaaatagttcaggtgtgaagttcttgccttgtaggaatgga 266

                                                                       
Query: 241 gaaatgatttaagtctctacagcccggtgggagtgagggggtaggggagtagtatgcatt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaatgagttaagtctctacagcccggtgggagtgagggggtaggggagtagtatgcatt 206

                
Query: 301 tgttt 305
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)