NNNNTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAAGAAGAAAGAACTTATGGCATAGCACTGAGGCAATGG
CACAAGGAAATAACTGGTTGATAGAAAGTGTCCCTGAGTTTCTGAATGAT
GCAAGCCTTTATTGCTGCATAGCCAAAGGGAAACAGAAATCCTTCACAAA
AATCAAAGAGAGGAGCCAAATAAACACCTTTCATCCAGCAAGATCAAAAA
CTGCTCTTAGAAAACTGGCAAAGTGTACAAAACACGCAAAACAAGTTTCT
GTGTCAGTAAAGTAGGATCTTCACTTATAGCCTCAATTTTACACTTTCTC
AGTGTACCAATTTCTATAAAACATGACCTTTCAAAGAATCAGCTTGACTA
AGTGTTTAATAAACAATCCTGTGCAACTATATTCCAGCTGCATCATTGGA
CATAAACTGAATTTTCCATGTGTTGCCACTGATGTGAGCCATTATCCTGT
TGTGCTTCAGGAGATTTATATGACCTTCAACAAGCAATCCAAATATGAAA
ATGAATAAGAACCCAACTTGCTAACTGTGACAGACAAAACAATTCTTTAA
GGCCACTAGTGCTACATTCAGGAGTCCAACTTTGTCTGTGTTCTGAATCT
AGTCAAAAACAGTTAAAGTATTGGAAATAAAACTTGCATCTGTACTATAA
ATAGATTACTGTTTTGCCCTTATTCTCTGAACAATAACATGTTAATTGCA
CAGTAATATN

CCTTTTCCGCTATACTGGGTATACTGTGGGCCGCCTGTTTTTCTCCCTTT
TGGGACCTATAGAAGGATTTTCCCGATTATCCACTCATTTGGTCCCTGGA
ATGAACTTAAAGGTCCCTCTGTAGGTCCAGAGAGGTCAAACGGCTCTTCT
GTGGAAAGGGAAGATCCCTCTCGCTTATGCAAGACAGCGAGGAACTAACC
TGGGCACAACTTGCTAGTTCCTCAGGCGAGTCATTGGATATCCCCCGCCC
CGGCANAGCTGTTGAAAATTTTCGTGCTCCTCATGCAAATGATGCAAATC
CTAGAGCCCCCTGGGGAGGTAGCACTGATTCTTCTACCCTCTGCGTATTC
TGCTGAAATCCTCCACTACTCCTGGACAGATCTCATAATCCCTTGTTAGG
ATTACGAGCAAGGTGCGATAAATCCCTGGACACACTGGACAAAGACCGGT
GGAGCCTGCACACTGTGTACTGTGCTTCACGCTTCCCTGTAGTTTCTATC
CCCCCGTGTATGTAAAGTCCCCACCCTGCCTACCTTTTGGGAAGAACTTA
CAAAGTTGGCTCCTACCCCTTGTGCCGCAGATGAGTACAGAGCTCTGGCC
CCCCTTGAGTAATTCACCGGCATCTACACCATCCTTCTCCAGACTATGAA
TATCGCGGGGACCCTTCGTGAAGCTGTAGGAAAGATCCTTAGGACATTAC
AACATCTCTCTGCTTGGAGAGCTTACAACTTCGCCGGGTGAGGATCCCCA
GAGTATCAGCGATCGGTGCGCCTGTCCCTGGGTGCTAACCTTGGAGC

Query= MSMg01no507_a24.b1 MSMg01no507_a24.b1 CHROMAT_FILE:
MSMg01no507_a24.b1 PHD_FILE: MSMg01no507_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:28 2005
         (653 letters)



>mm_chrX_140471418_140472472
          Length = 1055

 Score =  559 bits (289), Expect = e-163
 Identities = 494/563 (87%), Gaps = 16/563 (2%)
 Strand = Plus / Minus

                                                                       
Query: 96  tgatgcaagcctttattgctgcatagccaaagggaaacagaaatccttcacaaaaatcaa 155
           ||||||||| ||| || ||||  |||||| |||||||||||||| |||||||||||||||
Sbjct: 851 tgatgcaaggcttcatggctgtgtagccagagggaaacagaaattcttcacaaaaatcaa 792

                                                                       
Query: 156 agagaggagccaaataaacacctttcatccagcaagatcaaaaactgctcttagaaaact 215
           |||||| | ||||| |||| |||||||||||||||||||||||| | |||  ||||||||
Sbjct: 791 agagagcacccaaacaaacccctttcatccagcaagatcaaaaaattctcaaagaaaact 732

                                                                       
Query: 216 ggcaaagtgtacaaaacacgcaaaacaagtttctgtgtcagtaaagtaggatcttcactt 275
           ||||| |||| |  |||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 731 ggcaaggtgtgc--aacaagcaaaccaagtttctctgtcagtaaagtaggatcttcactt 674

                                                                       
Query: 276 atagcctcaattttacactttctcagtgtaccaatttctat-aaaacatgacctttcaaa 334
           |||||||||||||||| ||||||| ||||||||||| || | |||||||||| |||||||
Sbjct: 673 atagcctcaattttactctttctcggtgtaccaattgctgtcaaaacatgacatttcaaa 614

                                                                       
Query: 335 gaatcagcttgactaagtg-ttt-aataaa-caatcctgtgcaactatattccagctgca 391
           |||||| |||| ||||| | ||| || ||| || |  |||||||||||||||||||||||
Sbjct: 613 gaatcaacttgtctaag-gatttcaa-aaatcattt-tgtgcaactatattccagctgca 557

                                                                       
Query: 392 tcattggacat-aaactgaattttccatgtgttgccactgatgtgagccattatcctgtt 450
           ||||||||| | ||| |||||   ||||||||||||||||||||||||  ||| ||||||
Sbjct: 556 tcattggac-tgaaagtgaatggcccatgtgttgccactgatgtgagctgttagcctgtt 498

                                                                       
Query: 451 gtg-cttcaggagatttatatgaccttc-aacaagcaatccaaatatgaaaatg-aataa 507
           ||| |||||||||| ||||||||||||| || |||||||| ||||||| ||||| |||| 
Sbjct: 497 gtggcttcaggagaattatatgaccttccaa-aagcaatctaaatatgtaaatgtaatag 439

                                                                       
Query: 508 gaacccaacttgctaactgtgacagacaaaacaattctttaaggccactagtgctacatt 567
           ||||||||| |||||||| ||||||||| | ||||| ||||||||||| |||||||||| 
Sbjct: 438 gaacccaacctgctaactttgacagacatagcaattgtttaaggccacaagtgctacatg 379

                                                                       
Query: 568 caggagtccaactttgtctgtgttctgaatctagtcaaaaacagttaaa-gtattggaaa 626
           ||||||||||||| |||||||||||||||||||| |||| |||| |||| ||||| ||||
Sbjct: 378 caggagtccaactgtgtctgtgttctgaatctagccaaacacagataaaagtatttgaaa 319

                                  
Query: 627 taaaacttgcatctgtactataa 649
           || ||||||||||||||||||||
Sbjct: 318 tacaacttgcatctgtactataa 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1055
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1045
Effective search space:   671935
Effective search space used:   671935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)