AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAAATCGCGCGGAA
TCACAACTCACTTCAAAAAATAAGGAGAACACTGCTAAAGAGTTACAAGT
CCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAAG
AAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACAG
GAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGACCT
ATTAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCTGG
AGATAGAAACCCTAGGAAATTTTTCTGGAACCATAGATGCCAGCATCAGC
AACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCCAT
AGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCC
TAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTA
CGCATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGC
AAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAG
AGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGAC
CAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAATGCACT
AAATAAAGATAGAATACTAATAGCAGTAAGGGAAAAAGGTCAAGTAACAT
ATAAAGGCAAGCCTATCAGAA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCTGATTAGGAACCTTTGTTACATC
TGGAAAATACCTCCACCTTATTGTATTCCATTGGTTAGATGGAATTTATA
GGACCTACTTCTCAGTCAAGAAGCAGGGTTTATAAAAGAATGTGAGTTAT
TTTGTCTACCACTGTGGCTAGGATGGAGATTCTTGATTACAGTGTGGGAG
ACAGTGTTTGTTCCCTGAGAAACAGCACTATCATCCATGGAAAGTAATTT
ATTTGGCAAGAGCATTCTTTTTGTGCCTTCCACAACAAAATTCATTCTTG
ATTTATTCTTCTATGGTGTAGTCCAGTTTTTATTTCCAGTATTTTTTATA
AATAAACCAATTATAAGTTATATTCATGTCACTGAAGACAAAACAGTGAA
CTAACCTTTATCCATTTAACCCAAAACAAATGGAGGTCCTTAATCAGAAA
TAACTAAGCTAGCCAGACTAAAACCCTTCATAAATCATACCCCTTTGGGT
ATGTGTAACCTACAGAATGAGCTCAAAACTTGTCTATAATTTGCGGTCAA
GGTGAAGTGCAAAGGCAACCTTTCTTAACCCAGCCACAGAAGCATCAGTA
GTCTTGGAGATCTGCTATTTTATGGTAGTTTAGGAATCCTCTTCCCTGTT
CTAGACCTAATGATATGAAGTATAATGGGCTTTCATGCTGCTGACATTGA
GCTTCCTTTAGCTTATTGGGGGA

Query= MSMg01no507_g03.g1 MSMg01no507_g03.g1 CHROMAT_FILE:
MSMg01no507_g03.g1 PHD_FILE: MSMg01no507_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:54 2005
         (660 letters)



>mm_chrX_90257904_90258965
          Length = 1062

 Score = 1245 bits (644), Expect = 0.0
 Identities = 657/662 (99%), Gaps = 2/662 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgattaggaacctttgttacatctggaaaatacctccaccttattgtattccattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 agctgattaggaacctttgttacatctggaaaatacctccaccttattgtattccattgg 848

                                                                       
Query: 61  ttagatggaatttataggacctacttctcagtcaagaagcagggtttataaaagaatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ttagatggaatttataggacctacttctcagtcaagaagcagggtttataaaagaatgtg 788

                                                                       
Query: 121 agttattttgtctaccactgtggctaggatggagattcttgattacagtgtgggagacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 agttattttgtctaccactgtggctaggatggagattcttgattacagtgtgggagacag 728

                                                                       
Query: 181 tgtttgttccctgagaaacagcactatcatccatggaaagtaatttatttggcaagagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tgtttgttccctgagaaacagcactatcatccatggaaagtaatttatttggcaagagca 668

                                                                       
Query: 241 ttctttttgtgccttccacaacaaaattcattcttgatttattcttctatggtgtagtcc 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tcctttttgtgccttccacaacaaaattcattcttgatttattcttctatggtgtagtcc 608

                                                                       
Query: 301 agtttttatttccagta--ttttttataaataaaccaattataagttatattcatgtcac 358
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 agtttttatttccagtattttttttataaataaaccaattataagttatattcatgtcac 548

                                                                       
Query: 359 tgaagacaaaacagtgaactaacctttatccatttaacccaaaacaaatggaggtcctta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgaagacaaaacagtgaactaacctttatccatttaacccaaaacaaatggaggtcctta 488

                                                                       
Query: 419 atcagaaataactaagctagccagactaaaacccttcataaatcatacccctttgggtat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atcagaaataactaagctagccagactaaaacccttcataaatcatacccctttgggtat 428

                                                                       
Query: 479 gtgtaacctacagaatgagctcaaaacttgtctataatttgcggtcaaggtgaagtgcaa 538
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 427 gtgtaacctacagaatgagctcaaaacttgtctatagtttgcggtcaaggtgaagtgcaa 368

                                                                       
Query: 539 aggcaacctttcttaacccagccacagaagcatcagtagtcttggagatctgctatttta 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 367 aggcaacctttcttaacccagccacagaagcatcagtagtcttggagatctgctatctta 308

                                                                       
Query: 599 tggtagtttaggaatcctcttccctgttctagacctaatgatatgaagtataatgggctt 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tggtagtttaggaatcctcttccctgttctagacctaatgatatgaagtataatgggctt 248

             
Query: 659 tc 660
           ||
Sbjct: 247 tc 246


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1062
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1052
Effective search space:   683800
Effective search space used:   683800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)