Query= MSMg01no507_l22.b1 MSMg01no507_l22.b1 CHROMAT_FILE:
MSMg01no507_l22.b1 PHD_FILE: MSMg01no507_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:23 2005
(587 letters)
>mm_chrX_4282950_4283936
Length = 987
Score = 1021 bits (528), Expect = 0.0
Identities = 570/584 (97%)
Strand = Plus / Plus
Query: 4 ggaattccttataatcctcaaggacaaggcaatgtggaatgggcctatggaactttaaaa 63
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 204 ggaattcattataatcctcaaggacaaggcattgtggaatgggtctatggaactttaaaa 263
Query: 64 caataacttcataaaattaaaaatggggaattatacccccctgtataccacaaaactttt 123
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caataccttcataaaataaaaaatggggaattatacccccctgtataccacaaaactttt 323
Query: 124 taaatcatgctcttttattttaatttttttaaaaaaaatttagatatgcatggacattca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaatcatgctcttttattttaatttttttaaaaaaaatttagatatgcatggacattca 383
Query: 184 acagctgagcatttttgtcatcctaacacttcaactacgtatacttcagtgaagcggaag 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 acagctgagcatttttgtcatcctaacacttcaactacgtatacttcagtgaagtggaag 443
Query: 244 gatcccatgaaaggccaatggcatggacaggaccctgttctcgtatggggacaaggtcac 303
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 gatcccatgacaggccaatggcatggacaggaccctgtactcgtatggggacaaggtcac 503
Query: 304 atttgggttttttcacaggaagaaaatggggctcagtggttgccagagaggctggtgcaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 atttgggttttttcacaggaagaaaatggggctcagtggttgccagagagggtggtgcaa 563
Query: 364 caaatggaacaaccccatgctcctgctgattcccctactgatgatgatgtttcctgcaca 423
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 564 caaatggaacaaccccatgctcctgctgattcccctacttatgatgatgattcctgcaca 623
Query: 424 tggtgaagcccactgggcctatgttcctgacctactactgatacatccagcagtatggac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggtgaagcccactgggcctatgttcctgacctactactgatacatccagcagtatggac 683
Query: 484 cagactggaggttcttgtcaccagtaacaatactcaacttcttggacccccttggacaag 543
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 cagactggaggttcttgtcaccagtaataatactcaacttcttggacccccttggacaag 743
Query: 544 ggattcaatttataataaggctgtgactttcaattcattgggta 587
||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 744 ggattcaatttataataagactgtgactttcaatgcattgggta 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_l22.g1 MSMg01no507_l22.g1 CHROMAT_FILE:
MSMg01no507_l22.g1 PHD_FILE: MSMg01no507_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:24 2005
(452 letters)
>mm_chr6_66560139_66560990
Length = 852
Score = 310 bits (160), Expect = 2e-88
Identities = 384/474 (81%), Gaps = 41/474 (8%)
Strand = Plus / Minus
Query: 1 tcttagtccttcctttttgctctatatcataaatgttcccttaattctgatgtta-tata 59
||||||||| |||||||| |||||||||||||||||| |||| || || |||||| | |
Sbjct: 755 tcttagtccctcctttttactctatatcataaatgttaccttgatgctcatgttact-ca 697
Query: 60 aaagatgatccttgctgatagtgactttttaaa------aaa-a-atat-----ttta-a 105
|||||| | ||||||| ||||||||||| |||| ||| | |||| | || |
Sbjct: 696 aaagattacccttgctaatagtgactttctaaagcttttaaatatatatacatatatata 637
Query: 106 tttactctaaataatcaagaata-tttaaaatatttgattgtaccttcaactctgattcg 164
|||| ||| |||||||| ||||| | | |||||||||||||||| || || ||| ||||
Sbjct: 636 tttattcttaataatcatgaatagtct-aaatatttgattgtacttttaattctcattcc 578
Query: 165 taagtataatttctatg----aacccataaaagtaatgagttcaaaat-tt-ccagtttt 218
||| || |||||||||| ||||| ||| |||||| | ||| || | ||||||
Sbjct: 577 taattacaatttctatggttt----cataacagttatgagt--ataatgttactagtttt 524
Query: 219 tactactcattaagtattaagtacttaatgagtcttatatgaaattttcatatgcctgta 278
|||||||||||| ||| |||||||||||||||||||||||||||||| ||| |||| | |
Sbjct: 523 tactactcattaggtaataagtacttaatgagtcttatatgaaatttacatttgcccgaa 464
Query: 279 tgtttgta-tgtaactttattaacccttactgaaatattgataaataaaaattgtgcaca 337
| |||||| | | |||||||| ||||||||||||||| ||| |||||||||||||| |||
Sbjct: 463 tatttgtact-tcactttattcacccttactgaaatactgaaaaataaaaattgtgtaca 405
Query: 338 tatgcatacatgatgtaggacatgttatttgtgtatgggtgtatgaatgtatatgtgtgt 397
||| ||||||||| |||||||||||||||||||||| |||||||| |||||||
Sbjct: 404 tatacatacatgacgtaggacatgttatttgtgtataggtgtatgcatgtatac------ 351
Query: 398 atacatgaagggatgtgtgtg--tgtgaacatggangntgggatacaactttgg 449
||||||||||| ||||||||| | |||||||||| | | ||| ||||||||||
Sbjct: 350 atacatgaagg-atgtgtgtgcatatgaacatggaggctaggagacaactttgg 298
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
