NNNAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATG
GGCGGAATTCAGCCATCTTTCCATGAAATCCCCAAAGGAGCTCACACTGG
CCAGGAGGCTCCAGGTCTATGACTCTAGTTTTAGATCTGCTTACATTTTA
AGAATAGCTGACATTTACCATATGATTTAGATTAGCTATTTAAGCACAAA
ACTCTCTCATGGTGTAGGTTCCTAAGGTTAAGGACCATGTGTGTCTTGCT
CTAAGCTACATCCTAAATATATAAAGCAATCTTTGGTGCATTTTTATTAC
AAAATAAACATGTCTTGGGGGAATAATAATTTGAAATCACAGAGAGCAGA
ACATGAAGTTTAATCACCTGACTCTTTCACAGTGAAGCAGAGCTCTGTGG
GTAAGCTTCCTAGACTACCGAATGCTGTAATACTCCAAATATTGAAGGAT
GTAATGCCTCCAACTGTTGGAAGCTTGAATAGCAAAGCAACCAGTCTTCA
ACATAAATTGCCTTAACTTAAGAGGTCAATGTTGTTCAAAGTCACAACTT
TCTGTCAATCTACATCTAGTGAATAACTGGTGCAATTATATAAAAGTTGA
GAGGCCAGCAGGCATGGTGGCTCATGCTGTAATCTCAATTAAATTGGAAG
CTAAAACAAAAGGCTTTCCATGAAAAAAAAAGGCAAATTTGAATTACACA
GTGAGTTCTATTTCTGCCAGAAATATAGATAACAAAGCCTGTCTCNACTA
TCCCTTCCAAAATAAAAA

TTTCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGATGGAAAAAGG
CCTGACAACAATCTGAACACTAGCTGAGGAGCTACAGGCACTAGACAGGT
GCTGAGGGAGGGAGAGAAAGGTTGTTTACTTCAGAGAAAAGCCCCATGAT
AGGTTATCCATTCACAAGTGGTTGGCCCTACAATCACACAAATGGAAACT
GTACCTGTATTCAGTAGTACATATATAATATATATTACATAATACATGAT
ATATTATATTTATAATGAATGTGAGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTNNNNNTNTNNNNNNNNNNNTTTTNNNTTTTTTTT
TTNNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNTTTTTTTTNNNTTT
TTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTNTTNNNTTTTNTTTTTT
TTTTTTTTTTTTNNTTTTTTNTTTTTTTTNTTTTNNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTNTTNTTNTTTTTT
TTTTTTTTNNNTN

Query= MSMg01no508_l17.b1 MSMg01no508_l17.b1 CHROMAT_FILE:
MSMg01no508_l17.b1 PHD_FILE: MSMg01no508_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:45 2005
         (640 letters)



>mm_chrX_61672878_61673917
          Length = 1040

 Score = 1197 bits (619), Expect = 0.0
 Identities = 635/641 (99%), Gaps = 4/641 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatccccaa-aggagctcacactggccaggaggctccaggtctatgactctagttttag 59
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aaatccccaaca-gagctcacactggccaggaggctccaggtctatgactctagttttag 675

                                                                       
Query: 60  atctgcttacattttaagaatagctgacatttaccatatgatttagattagctatttaag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atctgcttacattttaagaatagctgacatttaccatatgatttagattagctatttaag 615

                                                                       
Query: 120 cacaaaactctctcatggtgtaggttcctaaggttaaggaccatgtgtgtcttgctctaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cacaaaactctctcatggtgtaggttcctaaggttaaggaccatgtgtgtcttgctctaa 555

                                                                       
Query: 180 gctacatcctaaatatataaagcaatctttggtgcatttttattacaaaataaacatgtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gctacatcctaaatatataaagcaatctttggtgcatttttattacaaaataaacatgtc 495

                                                                       
Query: 240 ttgggggaataataatttgaaatcacagagagcagaacatgaagtttaatcacctgactc 299
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 494 ttgggggaataataatttgaaatcacagagagcagaatatgaagtttaatcacctgactc 435

                                                                       
Query: 300 tttcacagtgaagcagagctctgtgggtaagcttcctagactaccgaatgctgtaatact 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tttcacagtgaagcagagctctgtgggtaagcttcctagactaccgaatgctgtaatact 375

                                                                       
Query: 360 ccaaatattgaaggatgtaatgcctccaactgttggaagcttgaatagcaaagcaaccag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccaaatattgaaggatgtaatgcctccaactgttggaagcttgaatagcaaagcaaccag 315

                                                                       
Query: 420 tcttcaacataaattgccttaacttaagaggtcaatgttgttcaaagtcacaactttctg 479
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 314 tcttcaacataaattgccttaactgaagaggtcaatgttgttcaaagtcacaactttctg 255

                                                                       
Query: 480 tcaatctacatctagtgaataactggtgcaattatataaaagttgagaggccagcaggca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcaatctacatctagtgaataactggtgcaattatataaaagttgagaggccagcaggca 195

                                                                       
Query: 540 tggtggctcatgctgtaatctcaattaaattggaagctaaaacaaaaggctttccatgaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 194 tggtggctcatgctgtaatctcaattaaattggaagctaaaacaaaaggctttccatg-- 137

                                                    
Query: 600 aaaaaaaggcaaatttgaattacacagtgagttctatttct 640
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 aaaaaaaggcaaatttgaattacacagtgagttctatttct 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)