BAC Information

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BAC

Clone NameMSMg01-509G03
ChromosomeX (Build37)
Map Location 105,949,943 - 105,950,546
singlet/doubletsinglet
Overlap geneBrwd3
Upstream gene2610002M06Rik, Gm732, Gm378, LOC668516, Gm379
Downstream gene5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831, LOC213474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509G03.T7 (MSMg01no509_g03.b1)MSMg01-509G03.TJ (MSMg01no509_g03.g1)
ACCAG583073AG583074
length753762
length of high quality
(start - end)
417 (332 - 748)603 (81 - 683)
definitionCHROMAT_FILE: MSMg01no509_g03.b1 PHD_FILE: MSMg01no509_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:36 2005CHROMAT_FILE: MSMg01no509_g03.g1 PHD_FILE: MSMg01no509_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAGGAGCG
CGCGGAATTCATTAACATTCTCCAAGCCAAAAAAAGCCCAGGACCAGATG
GGTTTAGTGCAGAGTTCTATCATACCTTTAAAGAAGATCTAATTCCAGTT
CTGCACAAACTATTCCACAAAATAGAAGTAGAAAGTACTCTACCCAACTC
ATTCTATGAAGCCACAATTACTCTGATACCTAAACCACAGAAAGATCCAA
CAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATTGATGCAAAA
ATCCTCAATAAAGTTCTCACTAATTGTANGTAAGAATACATCAAAACAAT
CATCCATCCTGACCAAGTAACTTTCATCCCAGGGATGCAGGGATGGTTCA
ATATACAGAAATCCATCAACATAATCCAGTATATATACAAACTTAAAGAC
AAAAACCACATGATCATCTCCTTAGACGCGGAGAAAGCATTTGACAAGAT
CCAACACCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTCAAGGCC
CATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGGAGCCAACATC
AAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAG
ACAAGGCTGCCCACTTTCTCCCTACCTCTTCAACATAGTACTTGAAGTCC
TAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAATTTGGA
AAN
TTTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGATTCATCAAATTCTGCT
ATGAAAAATGCAAGCTTTTTGTGCCTAACTCAAACTTCCTACAAGCAGGT
CAAACTTCATTGAACGCAACACTGATATTCACTTTCCTTTCCAAAATATA
CACATATATATTACCAAGCATCCACAGTATTTGGAGTTGTCACATATGTG
TATGAAAAGAAATCCTAGACATGGGGTTGAGCAGTGCATGCTTTGAATCC
TAGCATTTGAGTGAGCACAAGGTCTGTCTAGGTAAGTCCCACACCAGTCA
GGAGCCCGGTACATAAAAGTAAAATGTAACTCTATATTTTAAATTGTTGT
TAATATTATCTTTGTTGAAAAGTAATATTGGATTATGGATTAATCTGAGT
AGCCATACTGACAATAAATTTACTATTAATTAAACAAGTTTGACATATAT
ATTATTACCAAGTATATGTAGTATATAGTGGTGTCATTAAAAGTTAGTAG
AATATACAAAACAAATTAAGCATGAAGCAACAAAAAAAGGTTTTTTGGCT
TGTTTTGTTTTAGACAGGGTCTCACTAGGCAATCCTAGCTGGCCTGGATT
TCTGGGAAGACACACTGCCCTCCAACCCCCGATTATCTGCCTGCCTCTGT
TTGGGGATAAAGTCATGTGCTACCACATCCAGATGACTCGAGTTCCTTTT
AGAAACTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_g03.g1 MSMg01no509_g03.g1 CHROMAT_FILE:
MSMg01no509_g03.g1 PHD_FILE: MSMg01no509_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:36 2005
         (603 letters)



>mm_chrX_105949743_105950745
          Length = 1003

 Score = 1031 bits (533), Expect = 0.0
 Identities = 587/605 (97%), Gaps = 3/605 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggattcatcaaattctgctatgaaaaatgcaagctttttgtgcctaactcaaacttcct 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggattcataaaattctgctatgaaaaatgcaagctttttgtgcctaactcaaacttcct 260

                                                                       
Query: 61  acaagcaggtcaaacttcattgaacgcaacactgatattcactttcctttccaaaatata 120
           |||| ||| |||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaacagatcaaacttcactgaatgcaacactgatattcactttcctttccaaaatata 320

                                                                       
Query: 121 cacatatatattaccaagcatccacagtatttggagttgtcacatatgtgtatgaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacatatatattaccaagcatccacagtatttggagttgtcacatatgtgtatgaaaaga 380

                                                                       
Query: 181 aatcctagacatggggttgagcagtgcatgctttgaatcctagcatttgagtgagcacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcctagacatggggttgagcagtgcatgctttgaatcctagcatttgagtgagcacaa 440

                                                                       
Query: 241 ggtctgtctagg-taagtcccacaccagtcaggagcccggtacataaaagtaaaatgtaa 299
           |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtctg-cttgggtaagtcccacaccagtcaggagcccggtacataaaagtaaaatgtaa 499

                                                                       
Query: 300 ctctatattttaaattgttgttaatattatctttgttgaaaagtaatattggattatgga 359
           |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 500 ctctatattttaaattgttgttaatagtatctttgttgaaaagtaatattggaatatgga 559

                                                                       
Query: 360 ttaatctgagtagccatactgacaataaatttactattaattaaacaagtttgacatata 419
           ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 ttaatttgtgtagccatactgacaataaatttactattaattaaacaggtttgacatata 619

                                                                       
Query: 420 tattattaccaagtatatgtagtatatagtggtgtcattaaaagttagtagaatatacaa 479
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 620 tattattaccaagtatatgtagtatatagaggtgtcattaaaagttagtagaatatacaa 679

                                                                       
Query: 480 aacaaattaagcatgaagcaacaaaaaaaggttttttggcttgttttgttttagacaggg 539
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aacaaatgaagcatgaagcaacaaaaaaaggttttttggcttgttttgttttagacaggg 739

                                                                       
Query: 540 tctcactaggcaatcctagctggcctggatttctgggaaga-cacactgccctccaaccc 598
           ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct: 740 tctcactaggcaatcctagctggcctggatttctgggaagatcacaccgtcctccaaccc 799

                
Query: 599 ccgat 603
           |||||
Sbjct: 800 ccgat 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)