BAC Information

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BAC

Clone NameMSMg01-510L16
ChromosomeX (Build37)
Map Location 115,104,369 - 115,104,690
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039319, LOC624284, LOC665066, EG624388
Downstream geneENSMUSG00000072994, LOC100039551, Tgifx1, LOC665087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510L16.T7 (MSMg01no510_l16.b1)MSMg01-510L16.TJ (MSMg01no510_l16.g1)
ACCAG584097AG584098
length746741
length of high quality
(start - end)
678 (69 - 746)318 (322 - 639)
definitionCHROMAT_FILE: MSMg01no510_l16.b1 PHD_FILE: MSMg01no510_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:23 2005CHROMAT_FILE: MSMg01no510_l16.g1 PHD_FILE: MSMg01no510_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTCAACTGTCGCATAAAAAATGGCTGAGAAGCACCTGAAAAAAATG
TTCAACATTCTTAATCATTAGGGAAATGGAAATCAAAACAATCTTGAAAT
TCTACCTAACACCAGTCAGAATGGCTAAGATCAAAAATTCAAGTGACAGC
AGATGCTGGGGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAAGCTGGTACAACCATTCTGGAAATCAGTCTGGCATTTCCTCA
GAAAAATTGACATAGTATTATCTGAAGATCCAACAATACTTCTCCTCGGC
ATATACTCAGAATATTCTAACTTTAATAAAGGTACATGCTCCACTATGTT
CATAGCAGCCTTATTTATGATAGCCAGAAGCTGGAAAGAATCCAGATGTC
CCTCAACAGAGGAATTGATACAGAAAATATGGTACATTTAAACAATAGAG
TACTACTCAGCTATTGAGAACAATGAATTTATGAAATTCTTAAGCAAATG
GATGTATCTGGATGATATCATCCTGAGTGAGCTAACCCAATCACAAAATA
ACACACATGATATGGACTCACTGATAAGTTGATATTAGCTCAGAAAATTA
GAATACCCAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAAGAA
GATCAAAGGGTGGATGCATCATTCCTTCCTAGAATGGGGAACAAAA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCACAAAATTGTAGAGNTATTCCATGTTTGGTTTGCATA
TTGAAAAACTGTATTATTGAACTTAATAGAGTGATCCAGATTTATAATGC
TGTCTTTAAAAATTGATATACTCTTTCATATTATCCATTATTTTAGTGAG
TATTTTTGATGACCTTCTTATTTGACCTACTTAGTTTTGCATTTCCACTA
TCGTTTTTGCTAGTTTAATCTTCTTCACTATTTCTACCTCCTTTTAAAAT
TTATCTTCATGTTGTGATANACTTCCTTATTTTATTTAGTTGCCAATTTT
CTGTTGATAAATACTGAAGTCTTCTTAGAATTGTTTTACAATGTTTATAA
TCATTATTCTGAAATTTACATATGGAATTTATGTAGCTGATTCTGATCAT
AGAAAAGTACTATAGGATTTGTATGTTTTGGAGGAGACAAGTTGTCATTG
TGTTTCACGTAACTGATATTTTGCTCTAGGTGCTGCTCATTTGTGGTATG
ATTATGGTTAATGATATTTTTGTTGTTTGTTTGTTGTAGTTATATTTTAA
TTTGTTTTTTCTCTCATTTCAATGTATGATTTCGCAATGTTCTTACTAAT
ATATACTATAGAATATCTGTGGCAATGTTTTCTTCTGTTGGACAGTTGTT
TCAGGTAGCAAGCATTATCACCAGTCTGCCTCTGATGGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_l16.g1 MSMg01no510_l16.g1 CHROMAT_FILE:
MSMg01no510_l16.g1 PHD_FILE: MSMg01no510_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:23 2005
         (318 letters)



>mm_chrX_115104169_115104890
          Length = 722

 Score =  588 bits (304), Expect = e-172
 Identities = 316/322 (98%), Gaps = 4/322 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccttattttatttagttgccaattttctgttgataaatactgaagtcttcttagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cttccttattttatttagttgccaattttctgttgataaatactgaagtcttcttagaat 463

                                                                       
Query: 61  tgttttacaatgtttataatcattattctgaaatttacatatggaatttatgtagctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgttttacaatgtttataatcattattctgaaatttacatatggaatttatgtagctgat 403

                                                                       
Query: 121 tctgatcatagaaaagtactataggatttgtatgttttggaggagacaagttgtcattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 402 tctgatcatagaaaagtactataggatttgtatgttttggaggagacaagttgtctttgt 343

                                                                       
Query: 181 gtttcacgtaactgatattttgctctaggtgctgctcatttgtggtatgattatggttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtttcacgtaactgatattttgctctaggtgctgctcatttgtggtatgattatggttaa 283

                                                                       
Query: 241 tgatatttttg----ttgtttgtttgttgtagttatattttaatttgttttttctctcat 296
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgatatttttgttgtttgtttgtttgttgtagttatattttaatttgttttttctctcat 223

                                 
Query: 297 ttcaatgtatgatttcgcaatg 318
           ||||||||||| ||||||||||
Sbjct: 222 ttcaatgtatgttttcgcaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 722
Length adjustment: 9
Effective length of query: 309
Effective length of database: 713
Effective search space:   220317
Effective search space used:   220317
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)