BAC Information

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BAC

Clone NameMSMg01-510O14
ChromosomeX (Build37)
Map Location 87,172,540 - 87,173,021
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667919, LOC100041727, LOC667934, Pet2, EG629419, 4932429P05Rik, LOC633246, Nanog-ps1
Downstream gene4930415L06Rik, EG547215, Gm370, LOC194615, LOC629471, LOC100041815, Gm44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510O14.T7 (MSMg01no510_o14.b1)MSMg01-510O14.TJ (MSMg01no510_o14.g1)
ACCAG584235AG584236
length709719
length of high quality
(start - end)
657 (53 - 709)599 (80 - 678)
definitionCHROMAT_FILE: MSMg01no510_o14.b1 PHD_FILE: MSMg01no510_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:37 2005CHROMAT_FILE: MSMg01no510_o14.g1 PHD_FILE: MSMg01no510_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAACTCACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGATCTTTCCAGTCTTTTATCATGAATGGGTGTTGGA
TTTTGTCTAATGCTTTCTCCATGTCTAAGGAGATGGTCATGTGGTTTTTG
TCTTTGAATTTGTTTATAAGTGGATTACATGGATGGATTTCCATATATTA
AACCATCCCTTCATCCCTGGAATAAAACCTACTTGTTCAACATAGATGAC
TGTTTTAATGTGTTCTTTGATTCGGTTAGAGGCAATTTTATTGAATATTT
TTGCATGGATATTCATAAGGGAAATTGGTCTGAAGTATTTATCTACTGTA
TTTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCA
TAGAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGGAATAGTTT
GTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTAATAAAACACTGCAC
TAAACCCGTCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATGACT
GCTTCTATTTCTTTAGGGGATATGGGACTATTTAGATCGTTAACTTGATC
CTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAATTTGTCCATTTCGT
CCAGGTTTTCCAGTTTTGTTGAGTACAGCCTTTTGTAGAAGGATCTGATG
GTGTTTTGA
NACGCGCGATTAAGTGGGTAGTCTGGNGGNCGCCTGGTTCAAAATTGCTG
GTGAACTATAGAAGTTTCGACAGAAGGCTCTCTCCCTCTCTCTTCCTCTG
ACCCTCTGTCCCTCTGTCTCTCTGTCCCTCTCTCCTCTCTCTTTCCTGTA
TATGGATAAAATGTGATTACCACCTTACTGCTTGGACATCTGATACCATG
ACTCCACCACCATTTCTGGGCTCCTCCTTTTAGAGTCATGAGCTAAAACT
AACTATTTCTTTCATGAATTAGTTTTAACAATTAAATTTATTATCATATA
TATATGTATATATATATCATTTATATGTAACATATATGAGCTATATATAA
GAAACATATAGAGATATAGATTATGTATACATGTGTGTTTCACATGTATG
TATGTGTACCACATGTATAATGTATAATTGCAAGTGCAGTCCAAAGGATG
GCAGCAACAGCTCAGGGAACTAGTCTTATGCATGTTTCTTAACCACAATG
TGGATGCTAGGAATCAAATTCAGTATTATAGAAGTTTTCATATCTGCTAA
ACCATCTTTCTAGCCTCCATATATTGATTGTTGTCATAAGTTTTATCACC
AGATAAAAGTAAAAATATCAGATATCTACATATCCTTCTGTGTAGTTATG
TATGGATGTACATCAACATAACCCTTAGAAGAATCAAAGATCAAGGACAT
CCCAAGAGCCACCAGCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_o14.g1 MSMg01no510_o14.g1 CHROMAT_FILE:
MSMg01no510_o14.g1 PHD_FILE: MSMg01no510_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:37 2005
         (599 letters)



>mm_chrX_87172540_87173538
          Length = 999

 Score =  866 bits (448), Expect = 0.0
 Identities = 472/482 (97%), Gaps = 4/482 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctccctctctcttcctctgaccctctgtccctctgtctctctgtccctctctcctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctctccctctctcttcctctgaccctctgtccctctgtctctctgtccctctctcctctc 423

                                                                       
Query: 61  tctttcctgtatatggataaaatgtgattaccaccttactgcttggacatctgataccat 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tccttcctgtatatggataaaatgtgattaccaccttactgcttggacatctgataccat 363

                                                                       
Query: 121 gactccaccaccatttctgggctcctccttttagagtcatgagctaaaactaactatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gactccaccaccatttctgggctcctccttttagagtcatgagctaaaactaactatttc 303

                                                                       
Query: 181 tttcatgaattagttttaacaattaaatttattatc----atatatatatgtatatatat 236
           |||||||||||| |||||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 302 tttcatgaattatttttaacaattaaatttattatcatatatatatatatgtatatatat 243

                                                                       
Query: 237 atcatttatatgtaacatatatgagctatatataagaaacatatagagatatagattatg 296
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atcacatatatgtaacatatatgagctatatataagaaacatatagagatatagattatg 183

                                                                       
Query: 297 tatacatgtgtgtttcacatgtatgtatgtgtaccacatgtataatgtataattgcaagt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tatacatgtgtgtttcacatgtatgtatgtgtaccacatgtataatgtataattgcaagt 123

                                                                       
Query: 357 gcagtccaaaggatggcagcaacagctcagggaactagtcttatgcatgtttcttaacca 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gcagtccaaaggatggcagcaacagctcagggaactagtcttatgcatgtttcttaacca 63

                                                                       
Query: 417 caatgtggatgctaggaatcaaattcagtattatagaagttttcatatctgctaaaccat 476
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 62  caatgtggatgctaggaatcaaattcagtattatggaagttttcatatctgctgaaccat 3

             
Query: 477 ct 478
           ||
Sbjct: 2   ct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)