CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGATGTATCAAGTAAGATTAAGAAAAGTTGTGTATACTGCTACT
AATCTCTAAAAATGGAAATTTTATTCAGTCATAAATCTAGGTGTCAAACC
TTCAGAGTACTATGTTTACAGTTTTATTGCCAACAGAAATCACAGGTGTT
TTCATATCACCTTATAGATCATCCTCAGATATTTTCAACTGTAACTACTT
GAAAATTACAGTAGATATTAAATTTATTTAAATATATATAATAATGTAAT
AGTATGTACTTAGTTTTAAATTAGAAAACCCTCTTAAAAGAGTCTAAAAA
AACTTGGTAAAGAAATGCTAGTTTTGTGCTTGTCCACGGTTCTCAAACGC
AGCTTCACTGCCACCTGGTGGCAGCCACTGCTCAACAACATAAAAAGGGT
TTCTGACATTTTTTTTAATTCTTTGAACGTTTCTTTAAAGTTTTCTTTAT
TTTTGAGAATTTTGTTTACTCAACTTTTTATCTTTTGAGCATTTCATATA
TAAGTACTACGTTTCCATCATTTCCACTCTTTCCTCTCTAATGCCTTCCA
TGTAAACCCCACTCTCAATTCATGACTTCTGTATTACATACACACAGATA
TACAGACACAGATTTTCTGTCTTCTCTGAGTCGAAATTGTGGCTATATAA
GTTCTGGATCCTGCTGTAAGC

ATTGATGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACCCCATTTT
TAATTGGGTTATTTGGATTTTTGAAGGTTAACTTCTTGAGTTCTTTATTT
TGGATATTAGTCCTTTGTGGGATGTAGGGTTAGTGGAGATTTTTTTTCCC
AATCTGTAGGTTGCCAATTTGTCCTATTGACAGTGTCCTTTCCCTTACAG
AAGCTTTCCAGTTTCATGAGGTCCCATTTATCAATTGTTGATCTTAGAGC
CTGGACCATTGTTGTTGTGTCCAGAAAATGTTTCCCCTGTGCCAATGAGT
TCGAGGCTCTTTCCCACTTCCTCTTCTTGAGATTCACATTCTATTAGATA
CCTTGAGGTCCTTGATCCACTTGGACTTGAGGTTTGCGCGAGGTGATAAA
TATGTATCTATTTTCATTCCCCTACATATAGACCACCTGTTGGATCAGCA
CCATTTATTGAAGACCATAATTAGTGTTTGATAAATTACATCACTCAGCT
TTTAATAAATGCACACATTGACCCATAAAACTTTGGGCGCCTAGATGTAA
CACGAGGACAAACATGATGAAGGCCGTCTCTCTTCTCATCAGGCTATGAG
AGGATGAATATTTAATAAATTATACTGAACCGTTTCACTTCTGTTTTCCT
ACTAGACATGGACAGCTCCTTCCTTGTTAG

Query= MSMg01no511_e07.b1 MSMg01no511_e07.b1 CHROMAT_FILE:
MSMg01no511_e07.b1 PHD_FILE: MSMg01no511_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:05 2005
         (673 letters)



>mm_chrX_109481607_109482679
          Length = 1073

 Score = 1210 bits (626), Expect = 0.0
 Identities = 653/670 (97%), Gaps = 15/670 (2%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcatgatgtatcaagtaagattaagaaaagttgtgtatactgctactaatctctaa 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 gaattcatgatgtatcaagtaagattaagaaaagttgtgtatactgctactaatctctaa 941

                                                                        
Query: 65   aaatggaaattttattcagtcataaatctaggtgtcaaaccttcagagtactatgtttac 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  aaatggaaattttattcagtcataaatctaggtgtcaaaccttcagagtactatgtttac 881

                                                                        
Query: 125  agttttattgccaacagaaatcacaggtgttttcatatcaccttatagatcatcctcaga 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 880  agttttattgccaacagaaatcacaggtgttttcatatcaccttatagatcatcctaaga 821

                                                                        
Query: 185  tattttcaactgtaactacttgaaaattacagtagatattaaatttatttaaatatatat 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  tattttcaactgtaactacttgaaaattacagtagatattaaatttatttaaatatatat 761

                                                                        
Query: 245  aataatgtaatagtatgtacttagttttaaattagaaaaccctcttaaaagagtctaaaa 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  aataatgtaatagtatgtacttagttttaaattagaaaaccctcttaaaagagtctaaaa 701

                                                                        
Query: 305  aaacttggtaaagaaatgctagttttgtgcttgtccacggttctcaaacgcagcttcact 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  aaacttggtaaagaaatgctagttttgtgcttgtccacggttctcaaacgcagcttcact 641

                                                                        
Query: 365  gccacctggtggcagccactgctcaacaacataaaaagggtttctgacattttttttaat 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 640  gccacctggtggcagccactgctcaacaacataaaaagggtttctgacatttttttaaat 581

                                                                        
Query: 425  tctttgaacgtttctttaaagttttctttatttttgagaattttgtttactcaacttttt 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580  tctttgaacgtttctttaaagttttctttatttttgagaattttgtttactcaacttttt 521

                                                                        
Query: 485  atcttttgagcatttcatatataagtactacgtttccatcatttccactctttcctctct 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520  atcttttgagcatttcatatataagtactacgtttccatcatttccactctttcctctct 461

                                                                        
Query: 545  aatgccttccatgtaaaccccactctcaattcatgacttctgtattacatacacacagat 604
            |||||||||             ||||||||||||||||||||||||||||||||||||||
Sbjct: 460  aatgccttc-------------ctctcaattcatgacttctgtattacatacacacagat 414

                                                                        
Query: 605  atacagacacagattttctgtcttctctgagtcg-aaattgtggctatataagttctgga 663
            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 413  atacagacacagattttctgtcttctctgagt-gaaaattgtggctatataagttctgga 355

                      
Query: 664  tcctgctgta 673
            ||||||||||
Sbjct: 354  tcctgctgta 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)