Query= MSMg01no511_g18.b1 MSMg01no511_g18.b1 CHROMAT_FILE:
MSMg01no511_g18.b1 PHD_FILE: MSMg01no511_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:17 2005
(433 letters)
>mm_chrX_106178731_106179563
Length = 833
Score = 783 bits (405), Expect = 0.0
Identities = 420/425 (98%)
Strand = Plus / Plus
Query: 9 tgttagaacatttgaattcaggtaggaagatgtgaaattccagtgatactcaagccttaa 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tgttagaacatttgaattcaggtaggaagatgtgaaattccagtgatactcaagccttaa 268
Query: 69 gatgtattgttttgggactgcagatcaacatgaagctagcagattcattaattgtctgca 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gatgtattgttttgggactgcagatcaacatgaagctagcagattcattaattgtctgca 328
Query: 129 gtttcacatccagaactagtctcttccaagaatgtctgggatatagccttgccttaaaac 188
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtttcacatccagaactagcctgttccaagaatgtctgggatatagccttgccttaaaac 388
Query: 189 cacttgccaaaagtgcaggagaaattacacatttaatacttgctaaacagatttaactgt 248
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 389 cacttgccaaaagtgcaggagaaattacacatttaatacttgctaaacagacttaactgt 448
Query: 249 ctgtggttataagtctcagaaattggcccaaaagtaagtttataaacttaacccccactc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctgtggttataagtctcagaaattggcccaaaagtaagtttataaacttaacccccactc 508
Query: 309 ttttagccataatctcagtttactcatagcacaaggaattgagtaaaccactgaaccagc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttttagccataatctcagtttactcatagcacaaggaattgagtaaaccactgaaccagc 568
Query: 369 cttcttggcctttttcctatagcaagatcatgaaagtatactgttttctccagcctatga 428
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 569 cttcttggcctttttcctatagcaagatcatgaaagtatactgttttcaccaccctatga 628
Query: 429 tgaaa 433
|||||
Sbjct: 629 tgaaa 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_g18.g1 MSMg01no511_g18.g1 CHROMAT_FILE:
MSMg01no511_g18.g1 PHD_FILE: MSMg01no511_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:17 2005
(505 letters)
>mm_chrX_106304020_106304925
Length = 906
Score = 884 bits (457), Expect = 0.0
Identities = 477/489 (97%), Gaps = 10/489 (2%)
Strand = Plus / Minus
Query: 18 tggcttcaaacttcctttcattcccttccatctgcctctgtctctaagattgccactgga 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 tggcttcaaacttcctttcattcccttccatctgcctctgtctctaagattgccactgga 847
Query: 78 accactcacactgtgaattcttacaaaaactaaaaacaaaacagagctaagagtcagaag 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 accactcacactgtgaattcttacaaaaactaaaaacaaaacagagctaagagtcagaag 787
Query: 138 agtgaagagggcagaaaaggaagaaaggctgaagaagggaggatagaaggagagggagca 197
||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 786 agtgaagagggcagaaaaggaaggaaggctgaagaagggaggataga---------agca 736
Query: 198 agggaaggaaggagagaggatggagggagattgggactcttccctcaagagaaagattca 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agggaaggaaggagagaggatggagggagattgggactcttccctcaagagaaagattca 676
Query: 258 cttacaatggaaacaagtaacaggcctctcttctgtgctaatattcgtatttacaaacaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cttacaatggaaacaagtaacaggcctctcttctgtgctaatattcgtatttacaaacaa 616
Query: 318 aacaagtaacttgaagatcttgtgaaaccacgtctataatgactaagaacacaggcaaat 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aacaagtaacttgaagatcttgtgaaaccacgtctataatgactaagaacacaggcaaat 556
Query: 378 ttttcatttatataaaagaggaaagacat-tttttttcagctaacaattttaaccaatta 436
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 555 ttttcatttatataaaagaggaaagacatatttttttcagctaacaattttaagcaatta 496
Query: 437 ttgtggtgctggtgaaaagtttccttctttcaataaaattcacagtagttattattactc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttgtggtgctggtgaaaagtttccttctttcaataaaattcacagtagttattattactc 436
Query: 497 atttaaaaa 505
|||||||||
Sbjct: 435 atttaaaaa 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 906
Length adjustment: 10
Effective length of query: 495
Effective length of database: 896
Effective search space: 443520
Effective search space used: 443520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
