BAC Information

Click to search

BAC

Clone NameMSMg01-511O07
ChromosomeX (Build37)
Map Location 41,076,439 - 41,076,763
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz1, Gm362, LOC100039977, LOC100039987
Downstream geneLOC637141, Wdr40c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511O07.T7 (MSMg01no511_o07.b1)MSMg01-511O07.TJ (MSMg01no511_o07.g1)
ACCAG584981AG584982
length720724
length of high quality
(start - end)
325 (70 - 394)387 (78 - 464)
definitionCHROMAT_FILE: MSMg01no511_o07.b1 PHD_FILE: MSMg01no511_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:52 2005CHROMAT_FILE: MSMg01no511_o07.g1 PHD_FILE: MSMg01no511_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCTATATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTAGTCTCTCAGTTCATGTGGCTGAATGTCTCATATGGCTTT
CAGTATAAGCCAGAATCCAAAGGAATTCTGTGGCTGAATGTCTCAGATGG
CTTTCAGTATAAACCAGAATCCATTCATTTCTAACAACAAGAAATGAATG
GAGTTGCTAATAAGATTGAGGGCAAGCTGTCTAATAGGGAGCAACTGTCT
TTCTTCTATGTCCTTTACATAGAATGTCAAAAGACATGACATAAATTAAA
GGTGGAATTTCCCACCTTAAAAGATATATTAAAGGTGTATCTTCCCATAT
GAAAACCCAGATTATAAATGGTCTTTCCACTTCTACCGACATAACAACAA
CAAAAACATGCTCATAGGTATGCCCAGCCATTTGGGTTTTAGCTAATCCC
AGATATAGTCAAGTTGAGTAGTAATCACATACTCTCTCCTTCAGCAGCCC
ATAACTACCAACAGATTCTCTTCCAGATACAAGGACTTCATAGCCTCTCC
TACATTCATGCTGAAATTGTGACTACCCATTTTTCTGTAGGCATTTTTTT
TTGCAGACAATTCACCATCCTGTCGATTACCACAGCAACAATTACTGCTT
CTACTACCACTACTACTACTACTACTACTATTACTACTACTACTACTACT
ACCTCTATACTGCTGTTGCC
TGCAATGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATT
TTTTAATGGGGTTATTTGATTTTCTGAAGTTCACCTTCTTGAGTTCTTTA
TATATGTTGGATATTAGCCCCCTATCTGATTTAGGATAGGTAAAGATCTT
TCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTT
GCAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAATTCTCGATCTTA
CAGCACAAGCCATTGCTGTTCTATTCACGAATTTTTCCCCTGTGCCCATA
TCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGAAGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAGCACA
TTCACAAAGGAACTCACAAAATATGTACTCACTGATAAGCGGATATTAGC
CCAAAACCTAGGATACCTAAGATATAAGATACAATTTGCTAAACACATGA
AACTCTAGAAGAATGAAGACCGAAGTGTGGACACTATGCCCCTCCTTACA
ATTGGGAACAAAACACCCATAGAAGGAGTTACAGAGACAAAGTTTGGAGC
TGAGACTAAAAGAAGGACCATCTAGAGACTGCCTTATCCTGTGGATCTCC
CCCTAATCAGCTTTCAAATGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_o07.b1 MSMg01no511_o07.b1 CHROMAT_FILE:
MSMg01no511_o07.b1 PHD_FILE: MSMg01no511_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:52 2005
         (325 letters)



>mm_chrX_41076239_41076963
          Length = 725

 Score =  598 bits (309), Expect = e-175
 Identities = 321/325 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcatgtggctgaatgtctcatatggctttcagtataagccagaatccaaaggaattct 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttcatgtggctgaatgtctcagatggctttcagtataagccagaatccaaaggaattct 260

                                                                       
Query: 61  gtggctgaatgtctcagatggctttcagtataaaccagaatccattcatttctaacaaca 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gtggctgaatgtctcagatggctttcagtataagccagaatccattcatttctaacaaca 320

                                                                       
Query: 121 agaaatgaatggagttgctaataagattgagggcaagctgtctaatagggagcaactgtc 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 agaaatgaatggagttgctaataagattgagggcaagctgtcaaatagggagcaactgtc 380

                                                                       
Query: 181 tttcttctatgtcctttacatagaatgtcaaaagacatgacataaattaaaggtggaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcttctatgtcctttacatagaatgtcaaaagacatgacataaattaaaggtggaatt 440

                                                                       
Query: 241 tcccaccttaaaagatatattaaaggtgtatcttcccatatgaaaacccagattataaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccaccttaaaagatatattaaaggtgtatcttcccatatgaaaacccagattataaat 500

                                    
Query: 301 ggtctttccacttctaccgacataa 325
           |||||||||||||| ||||||||||
Sbjct: 501 ggtctttccacttcaaccgacataa 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)