BAC Information

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BAC

Clone NameMSMg01-512B09
ChromosomeX (Build37)
Map Location 70,255,004 - 70,255,585
singlet/doubletsinglet
Overlap geneZfp185
Upstream geneCnga2, Magea4, Gabre, Magea10, Gabra3, Gabrq, Magea9, Cetn2, Nsdhl
Downstream genePnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512B09.T7 (MSMg01no512_b09.b1)MSMg01-512B09.TJ (MSMg01no512_b09.g1)
ACCAG585128AG585129
length751752
length of high quality
(start - end)		610 (44 - 653)615 (70 - 684)
definitionCHROMAT_FILE: MSMg01no512_b09.b1 PHD_FILE: MSMg01no512_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:07 2005CHROMAT_FILE: MSMg01no512_b09.g1 PHD_FILE: MSMg01no512_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACATTTCTCACATCCTATGGGCCTCCTTCTCTCTCCCCACTCCAGT
TTAGCAGTAGCTGAGGCCGAGTGGCAGGAAATTAAGATACTCCCTTCAGG
ATGTTATATTGCACAGAAAGGCATCCTGTGAGGGTTTGACCAATATCTTT
TTCATGACCTATAAAGGTTACAGCTGAAACTGCAGTTGCCCTGCTTCAAG
GCCTAGGGTTTCCCCATATTGCCCTACCTCCGAGCGGCTCTTTCTGAAGA
ATCTTGCCTCTGTTTACTCAGGACTACTTCCTGGCAGAGCTGGAGATGGC
AATTGGTTTCTTTTCACTGCAGAGGAGTTTAGTTTCCTCTTACCTGAGGC
TGAAAACTTCAATTAGTTTTACAACCTAGTCCCTGAAAAGCATGGCCATC
GCACATTCTTTTTGTTCTGCCAGCTTAGAGCCTCCCAGGGATGGTAGTCA
CTGATAATGGGTTTTTATTCTGTCCTTACCTCAGGAGTTCCCAGAGCACT
GCAGGGAGGTTCTAAGATGATAAAAATAAAGAGACAGGAGTAGTGATGAG
AGATGAGTGCAACAACACCTTCTACTGTCTTTCCTGTGGCCCCCACCTTT
GAGAGTACATTGCAGACAAACTGAGGAAGACATACCCTCTTCGATGGTCT
CAGATGTAGCTTGAGCTGTTTATGTCAGTACGGTAGCTTGTTTTTCTTAC
T

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTGGAAGCCTACTCACTCTTCATCACTGTA
CCTGTGAGGATTTCAGCATACCTGTATGGTGAACCGGGCTCCTCCGGAAA
CCTGTACAACATTGGAGGCTAGAGATTTTCATTTCATTTCACACTGAAGA
GATGAAGGACTCCAGGATGGATGATTTGAGGATTTCAAGCTCAATGTACC
CAGAACTTTCACACAATGCGCACACCTTACTTACTGTTACACTGATTCAA
CTGCCCTGTGTCAAAACATCTTAGTTCATCCTTAGGAAACGCAGTTGACT
GACTTCAGTACAACGGGAGGGTATAAGACAAAACAAAGTCTGTCCTACAG
AAAAATCAAGGCAAGTTCACTTGCCAACAAAGCTTCTAGCCAGTGGGGCC
ACTGGCTATTCCCCCTTCATTGTGCTCACAAACCAACTGTCAACAGCTCT
GGGATCAAAGTGACAAGAAGCAACAACCCTACCTCTCTTCACAGTGGGTT
TTCAGAACATCCTTAATTTTGACCTCCATGGCACTGAAAGATGAGGTCAT
GATCCTTGAGAATCTTTCTCTGTTTTCCTGAAGAACTTTGTTAGGTGGCT
CTGTAAGGGGACATAATCTTGTAGGCATAACTGTGAAGGTCCCTCAAGGG
TACTGGAAAGACACTTGCTATCCATAGGTGTAGATGATCTGACAATGCAA
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_b09.b1 MSMg01no512_b09.b1 CHROMAT_FILE:
MSMg01no512_b09.b1 PHD_FILE: MSMg01no512_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:07 2005
         (610 letters)



>mm_chrX_70254800_70255809
          Length = 1010

 Score =  978 bits (506), Expect = 0.0
 Identities = 572/606 (94%), Gaps = 24/606 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacatttctcacatcctatgggcctccttctctctccccactccagtttagcag 64
           ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacagatatcacatcctatgggcctccttctctctccccactccagtttagcag 264

                                                                       
Query: 65  tagctgaggccgagtggcaggaaattaagatactcccttcaggatgttatattgcacaga 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 tagctgaggccgagtggcaagaaattaagatactcccttcaggatgttatagtgcacaga 324

                                                                       
Query: 125 aaggcatcctgtgagggtttgaccaatatctttttcatgacctataaaggttacagctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaggcatcctgtgagggtttgaccaatatctttttcatgacctataaaggttacagctga 384

                                                                       
Query: 185 aactgcagttgccctgcttcaaggcctagggtttccccatattgccctacctccgagcgg 244
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 385 aactgcagttgccctgcttcaaggcccagggtttccccatattgccctgcctccgagcgg 444

                                                                       
Query: 245 ctctttctgaagaatcttgcctctgtttactcaggactacttcctggcagagctggagat 304
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | 
Sbjct: 445 ctctttctgaagaaccttgcctctgtttactcagcactacttcctggcagagctgga-a- 502

                                                                       
Query: 305 ggcaattggtttcttttcactgcagaggagtttagtttcctcttacctgaggctgaaaac 364
             |              ||  ||||||||||||||| |||||||||||||||||||||||
Sbjct: 503 --c--------------ca--gcagaggagtttagtatcctcttacctgaggctgaaaac 544

                                                                       
Query: 365 ttcaattagttttacaacctagtccctgaaaagcatggccatcgcacattctttttgttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttcaattagttttacaacctagtccctgaaaagcatggccatcgcacattctttttgttc 604

                                                                       
Query: 425 tgccagcttagagcctcccagggatggtagtcactgataatgggtttttattctgtcctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgccagcttagagcctcccagggatggtagtcactgataatgggtttttattctgtcctt 664

                                                                       
Query: 485 acctcaggagttcccagagcactgcagggaggttctaagatgataaaaataaagagacag 544
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 665 acctcaggagttcccagagcactgcagggaggttctaagatgataaaa-taaagagacag 723

                                                                       
Query: 545 gagtagtgatgagagatgagtgcaacaacaccttctactgtctttcctgtggcccccacc 604
           |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 724 gagtagtgatgagagatgagtgcaaca---ccttctactgtctttcctgtggcccccacc 780

                 
Query: 605 tttgag 610
           ||||||
Sbjct: 781 tttgag 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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