BAC Information

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BAC

Clone NameMSMg01-512F08
ChromosomeX (Build37)
Map Location 132,718,795 - 132,719,097
singlet/doubletsinglet
Overlap genenone
Upstream geneTceal6, EG621322, Pramel3, EG621352, EG331529, EG621380, EG666040, EG666045, AV320801, EG621467, Nxf7, 4930534P07Rik, 1700008I05Rik, 1700129I15Rik, Gprasp1, Gprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8
Downstream geneTceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196, Kir3dl2, LOC100041079, Kir3dl1, Tceal3, Tceal1, Morf4l2, BC065397, Glra4, LOC100041122, Plp1, Rab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512F08.T7 (MSMg01no512_f08.b1)MSMg01-512F08.TJ (MSMg01no512_f08.g1)
ACCAG585317AG585318
length680659
length of high quality
(start - end)		309 (48 - 356)394 (80 - 473)
definitionCHROMAT_FILE: MSMg01no512_f08.b1 PHD_FILE: MSMg01no512_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:27 2005CHROMAT_FILE: MSMg01no512_f08.g1 PHD_FILE: MSMg01no512_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCATATGCCCACATCACACCCACCTTTGCTTACTAGTTATGGTA
CATGTTTATTAAAACCAAGAAATTAATGTTTATGCATTGCTTTTAAGTAA
AGGCTAGGCAAACTTTGCAAGATATTCCACTAATATTTTTGTGCTCAAAT
ATTCAACCTAGGACATACAGATTCCTTTAATTTACCAGGCTTTTTAGTCA
GCTATATTCCATTTGGCTTCTGTTGTATGTTTGCTCTTTTAAAGTTGCTA
TTTGTTTCTCTTTTCATACTCTCTCTCTTTTTTAAAGATCTATTTACTTT
ATANTGAGGTACACCTGGAGCTGGGCTCTTGAACCTTTCCCCAAAAAAAG
GGCCTTTTGTGAATTCTTATTAATAAGGGGGTTTTTCATAAACCCCCCTT
TGGGGGGTTCGTGCGGGAAATTAATATCTCTTCCCCCCCCCCCCGGGAAA
AAAAAAAAATCTCGCGGTGTTATTTTTTTTGTGTTGGGTGAGAGCCCTTA
TTCCTTTTTCTCCCCCCCCCCCCCAAAACAAAATATCATTTTTTTTTTTT
TTATGGGGGCACGAAACAATAAATAGTATATTCTTTTTCTCTCACTTAAT
AAAATTTATAATTTACAGTGGTGCGCGGAA

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCTCC
TTTTTGAAATGGGGTTATTTGGTTTTCTGGAGTCCAGCTACTTGAGTTCT
TTGTATTTATTGGATATTATTCCCCTATTGTGTTTTGGTTTGGTAAAGAT
TCTATCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTG
CCTTACAAAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTTGAT
CTTACTGCACAAGTCATTGCTGTTTTGTTCAGGAATCTTTCCCCTGTGTC
CATATCTTCGAGGCTTTTCCCCACCTTCTCTTCTATAACTTTCACTTTGT
CTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAA
GGAGATAGGAATGGATCAAGTCACATTCTTTTACATAATAACAGCCAGTT
GAGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTT
TAGCTCCTTTATCAAAGATCAGGTAACCATAAGTGGGTTGGGTACATTTT
CTGGGGCTTCAATTCTATTCCCTTGATCTACCCGTCTGGTGGTGAACCAG
TACAAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_f08.b1 MSMg01no512_f08.b1 CHROMAT_FILE:
MSMg01no512_f08.b1 PHD_FILE: MSMg01no512_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:27 2005
         (309 letters)



>mm_chrX_132718592_132719300
          Length = 709

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctcatatgcccacatcacacccacctttgcttactagttatggtacatgtttatt 63
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 204 gaattctcatatgcccacatcacacccatctttgcttactagttatgatacatgtttatt 263

                                                                       
Query: 64  aaaaccaagaaattaatgtttatgcattgcttttaagtaaaggctaggcaaactttgcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaaccaagaaattaatgtttatgcattgcttttaagtaaaggctaggcaaactttgcaa 323

                                                                       
Query: 124 gatattccactaatatttttgtgctcaaatattcaacctaggacatacagattcctttaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatattccactaatatttttgtgctcaaatattcaacctaggacatacagattcctttaa 383

                                                                       
Query: 184 tttaccaggctttttagtcagctatattccatttggcttctgttgtatgtttgctctttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttaccaggctttttagtcagctatattccatttggcttctgttgtatgtttgctctttt 443

                                                                       
Query: 244 aaagttgctatttgtttctcttttcatactctctctcttttttaaagatctatttacttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagttgctatttgtttctcttttcatactctctctcttttttaaagatctatttacttt 503

              
Query: 304 ata 306
           |||
Sbjct: 504 ata 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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