XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGGATGAATGGTGGATAAATAAATAGATCCAGGCAAAACAGACGGTATGG
CTGGAAGTGTCTACCCTAAAAGATCCTCACATTTTCCAAGTGCTCCATAG
CATTTTGATTTATACTTTACACTTGGAGGTCCAGACTGCACACCAGCCAC
ACAGAGAGCTTAATGAATGCTGGCTCGTTTCTTGCCTGCATGTTATGAGT
ACTCTGCCATAACAAGCCCCTTTTCCATCCCAAAGCTCCTTTTTATTAGA
GCAGAGTGTGTCTGAAGCAAGCCAAAGCCATTTTCCCCTTTATCAGCATG
GTCTACCTCTAGCTCCCCTCTTACAATTGTTGTCTGCCCCTTGGAATTCA
TTTAAACAATTAGTCTCCATGCTCCTTGTTAGCAATTTGGTTTGGTATGC
TGTCTTGATCTGGGTTCACTCCAAAATAACATTCCATATTGATTTTAAAA
TGTGGGGCCTGCATTTATCACATTTATCAACTCTGTCAGGTACCAAAGTG
TTTTCTTCCTGTCAGGGCAGATTAATACCCAGCAAGCTTTCTAACAGGTG
TAATATGCCCCCTCCTTATTGACAGCACATTGTCCTCTGGGCCTTTGGTT
TCAAACTTTTTTAAGGGCTCCAAAAATTAATATCCCGGATTTAAATCTTC
CCTCCAACCGTTGGGAACCCGGAAATTTT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCTAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAATTGGACATAGTACTAACGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAGTGGATACAGAACATGTGGTAC
ATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATAT
TAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACAC
ATGAAACTCAAGAAAATGAAGACTCGAGTGTGGACACTATGCCCCTCCTT
AGAATTGGGAAC

Query= MSMg01no512_j09.b1 MSMg01no512_j09.b1 CHROMAT_FILE:
MSMg01no512_j09.b1 PHD_FILE: MSMg01no512_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:48 2005
         (500 letters)



>mm_chrX_55938692_55939591
          Length = 900

 Score =  930 bits (481), Expect = 0.0
 Identities = 493/497 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggatgaatggtggataaataaatagatccaggcaaaacagacggtatggctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ggaattctggatgaatggtggataaataaatagatccaggcaaaacagacggtatggctg 641

                                                                       
Query: 64  gaagtgtctaccctaaaagatcctcacattttccaagtgctccatagcattttgatttat 123
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gaagtgtctgccctaaaagatcctcacattttccaagtgctccatagcattttgatttat 581

                                                                       
Query: 124 actttacacttggaggtccagactgcacaccagccacacagagagcttaatgaatgctgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 actttacacttggaggtccagactgcacaccagccacacagagagcttaatgaatgctgg 521

                                                                       
Query: 184 ctcgtttcttgcctgcatgttatgagtactctgccataacaagccccttttccatcccaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 520 ctcgtttcttgcctgcatgttatgagtactctgccataacaagccccctttccatcccaa 461

                                                                       
Query: 244 agctcctttttattagagcagagtgtgtctgaagcaagccaaagccattttcccctttat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agctcctttttattagagcagagtgtgtctgaagcaagccaaagccattttcccctttat 401

                                                                       
Query: 304 cagcatggtctacctctagctcccctcttacaattgttgtctgccccttggaattcattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cagcatggtctacctctagctcccctcttacaattgttgtctgccccttggaattcattt 341

                                                                       
Query: 364 aaacaattagtctccatgctccttgttagcaatttggtttggtatgctgtcttgatctgg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 340 aaacaattagtctccatgctccttgttagcaatttggtttggtatgctgtcttgatccgg 281

                                                                       
Query: 424 gttcactccaaaataacattccatattgattttaaaatgtggggcctgcatttatcacat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 280 gttcactccaaaataacattccatattgattttaaaatgtggggcctgcatttgtcacat 221

                            
Query: 484 ttatcaactctgtcagg 500
           |||||||||||||||||
Sbjct: 220 ttatcaactctgtcagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)