CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTAAGGATTCTCTAATTTCTAATTGAGAACCTAAGGCAGCTAGC
GAGTTCTTCACTAATAAAAGCCCTTTCCAATCATGACACTCTAAACTGTG
TGAGGCACTCTATACCCAACAGGAATTCCTCACTAAATCCCTTTGAAGTT
TGAAAAGCAGATCTGGAAATGTTTGTAAACAGACTGCTTCCTATAATTTC
ACCCTATTATTCCTAGGTTTGGACCAGCTCCCAAGGCGGTTGGAATTTCC
TATTTGTTCCTTTTCCTAAGTTCCTATTCCTAAGGCTTCGTATGTGTTTT
GTGACTTGACCTTTCTTTTTCTATTCTAGTGATTAAGATTGAAAATTCCC
ACCAACCCAAAGAAACTTCAAACAAACAAACAAACCTGTATTCTTGATTG
GTTGGAGAAAGATCAGCGGGTAGGGGCACACACAGAGCAAGTAAGAACTT
CACTGGAGTAGGCTGACTCCCCTGAGGCAGATAGCTATAGCCCTGTGTTT
CACTTAGTTGTAGTACTGGAGATTAAACTCGAGACTGGCGCCAAGGAATC
TAATACTGAACTATATCCCTATACCTCTTTTTGTTTTAAGAAAATGTTTC
ACTGAGTTGCTCAGGCTGGCTTTGAACTCCTTCTGTAGTTCAGGCAGGAC
TGGAACTTGTGATCCTTCCACCTCAACCTTCCTATGAAGTGGCATTACAA
GTCTGCCTGCCCAGTACAACTTTGTCN

CCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTACCTCTAGTTATTTTTGCATACTC
CAAGTAGGCACACAGATGCAGACACAAATGCTATGTCGGGGGCTATGGAG
ATGGTGCAGTGGGTTGAAGCAACTGGCACCAAGTTTGATGATTTGAGTTC
AATACCCAGGTTCCACATAGTAGAAGGACAGAACTAACTCTTGCAAGTTG
TCACGTGGCATGACCCCCCCCCCGCCACACACACACACACACACACACAC
ACACACACACACCACACTCAGAATAAATAAATACATACATACATACATAC
ATACATACATACATAACTTTTTAAAATCTAAAGAAAGCTATTAATTCTTT
CTTGTGTGCAAATGTGTTTCAAGGTAATCCAGATCAATGCAAGCTTTTTC
TGATATCCTTGTGTGGCCATGTGACAGCTGTAATCTCACTTTAGAGGAGA
AATTAGCTAAAGGTTTATTGGGAAACTCCTCTTCTGGTACATTGAGTGCC
TTTTCATGTCTACTTGCTTTGCACACAGACATGGCATCCGCAGCTCTGGC
ATGCATTCCAAAACCATGATGCAGGAGTGGGAAAGAAGTGTACGAAGGCA
CTTATGCCACTCACTCATTGAACAATAGCCAACAGTTACCGACTTCCAGA
CTTCTGTATGCATTAGAAAAGTCACCCTATTTCAAACCACTGCAGTTCAC
GTTTTCTACCACTTTTAGCTGAAACCTTCCTAACTGN

Query= MSMg01no515_b13.b1 MSMg01no515_b13.b1 CHROMAT_FILE:
MSMg01no515_b13.b1 PHD_FILE: MSMg01no515_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:16 2005
         (688 letters)



>mm_chrX_8716880_8717964
          Length = 1085

 Score = 1245 bits (644), Expect = 0.0
 Identities = 674/684 (98%), Gaps = 3/684 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaaggattctctaatttctaattgagaacctaaggcagctagcgagttcttc 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaaggacactctaatttctaattgagaacctaaggcagctagcgagttcttc 264

                                                                       
Query: 65  actaataaaagccctttccaatcatgacactctaaactgtgtgaggcactctatacccaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actaataaaagccctttccaatcatgacactctaaactgtgtgaggcactctatacccaa 324

                                                                       
Query: 125 caggaattcctcactaaatccctttgaagtttgaaaagcagatctggaaatgtttgtaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggaattcctcactaaatccctttgaagtttgaaaagcagatctggaaatgtttgtaaa 384

                                                                       
Query: 185 cagactgcttcctataatttcaccctattattcctaggtttggaccagctcccaaggcgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagactgcttcctataatttcaccctattattcctaggtttggaccagctcccaaggcgg 444

                                                                       
Query: 245 ttggaatttcctatttgttccttttcctaagttcctattcctaaggcttcgtatgtgttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 ttggaatttcctatttgttccttttcctaagttcctattcctaaggctttgtatgtgttt 504

                                                                       
Query: 305 tgtgacttgacctttctttttctattctagtgattaagattgaaaattcccaccaaccca 364
           ||||||||||||||||||||||||||||||| | ||| | |||| |||||||||||||||
Sbjct: 505 tgtgacttgacctttctttttctattctagt-a-taa-aatgaatattcccaccaaccca 561

                                                                       
Query: 365 aagaaacttcaaacaaacaaacaaacctgtattcttgattggttggagaaagatcagcgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aagaaacttcaaacaaacaaacaaacctgtattcttgattggttggagaaagatcagcgg 621

                                                                       
Query: 425 gtaggggcacacacagagcaagtaagaacttcactggagtaggctgactcccctgaggca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtaggggcacacacagagcaagtaagaacttcactggagtaggctgactcccctgaggca 681

                                                                       
Query: 485 gatagctatagccctgtgtttcacttagttgtagtactggagattaaactcgagactggc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 682 gatagctatagccctgtgtttcacttagttgtagtactggagattaaactcaagactggc 741

                                                                       
Query: 545 gccaaggaatctaatactgaactatatccctatacctctttttgttttaagaaaatgttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gccaaggaatctaatactgaactatatccctatacctctttttgttttaagaaaatgttt 801

                                                                       
Query: 605 cactgagttgctcaggctggctttgaactccttctgtagttcaggcaggactggaacttg 664
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cactgagttgctcagactggctttgaactccttctgtagttcaggcaggactggaacttg 861

                                   
Query: 665 tgatccttccacctcaaccttcct 688
           ||||||||||||||||||||||||
Sbjct: 862 tgatccttccacctcaaccttcct 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1085
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1075
Effective search space:   728850
Effective search space used:   728850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)