Query= MSMg01no515_g06.b1 MSMg01no515_g06.b1 CHROMAT_FILE:
MSMg01no515_g06.b1 PHD_FILE: MSMg01no515_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:41 2005
(687 letters)
>mm_chrX_109722434_109723521
Length = 1088
Score = 1278 bits (661), Expect = 0.0
Identities = 680/691 (98%), Gaps = 11/691 (1%)
Strand = Plus / Minus
Query: 2 ggaattctctatatgt---tctacgctaagattattatttcataaaaaatattttcacaa 58
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 795 ggaattctctatatgtagat----gctaagattattatttcataaaaaatattttcacaa 740
Query: 59 atcaatggcttgataatcaagaaatcacaattatttcagggtctggttggagatgagttt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atcaatggcttgataatcaagaaatcacaattatttcagggtctggttggagatgagttt 680
Query: 119 gatttctgatcagctagtgggttctgacagaaggatagaataatgctagtgttgccttct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gatttctgatcagctagtgggttctgacagaaggatagaataatgctagtgttgccttct 620
Query: 179 gctcagattaacctggcccagctgattctaagaaaataaaagaaactattccaagttcac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gctcagattaacctggcccagctgattctaagaaaataaaagaaactattccaagttcac 560
Query: 239 ctagcctagagtaggtcaaaatcaatcaaacctaaagcaaaatgaaccatcaatattctt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctagcctagagtaggtcaaaatcaatcaaacctaaagcaaaatgaaccatcaatattctt 500
Query: 299 ttttaccctgagaatatttcttaaagctgagacaaatcatcttaaagaacctagaccaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttttaccctgagaatatttcttaaagctgagacaaatcatcttaaagaacctagaccaag 440
Query: 359 aactaacgagtacagcagaatattatcaaattaatcagacttaaaaaaatccataatttt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aactaacgagtacagcagaatattatcaaattaatcagacttaaaaaaatccataatttt 380
Query: 419 tatttttatcagttaaactgttttactttattaaattccaaaacaaattcagttgtatat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tatttttatcagttaaactgttttactttattaaattccaaaacaaattcagttgtatat 320
Query: 479 gagctgtaattcctttaaaatgtcatttattcag--atgagtaatatttattatgcacta 536
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 319 gagctgtaattcctttaaaatgtcatttattcagatatgagtaatatttattatgcacta 260
Query: 537 ataatgaacaagcaaccttatgctgtgtatgtgagggagcacatatatacatatacacat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ataatgaacaagcaaccttatgctgtgtatgtgagggagcacatatatacatatacac-- 202
Query: 597 atattatatttaatatttaatcctcatttaatcctcaaaataagtgtgagtgtctcctcc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattatatttaatatttaatcctcatttaatcctcaaaataagtgtgagtgtctcctcc 142
Query: 657 attttctatatgaagaaaacatattttcctt 687
|||||||||||||||||||||||||||||||
Sbjct: 141 attttctatatgaagaaaacatattttcctt 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space: 729806
Effective search space used: 729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_g06.g1 MSMg01no515_g06.g1 CHROMAT_FILE:
MSMg01no515_g06.g1 PHD_FILE: MSMg01no515_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:41 2005
(650 letters)
>mm_chrX_109534284_109535333
Length = 1050
Score = 1203 bits (622), Expect = 0.0
Identities = 643/650 (98%)
Strand = Plus / Plus
Query: 1 actttgtagaccaggctggcctagaactcaaaaatccgcctgcctctgcctcctgaatgc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagaccaagctggcctagaactcaaaaatccgcctgcctctgcctcctgaatgc 260
Query: 61 tgggattaaaggtgtgagccaccatggctaagactcattttcttaatgggagggatcaaa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcgtgagccaccatggctaagactcattttcttaatgggagggatcaaa 320
Query: 121 taaaactaaaagtccagccatcattaagcgtctgctggtagtctgagaagtgagtcaagt 180
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 taaaactaaaagtccagccgtcattaagcgtctactggtagtctgagaagtgagtcaagt 380
Query: 181 cacagtacagaaccatgtgtcgtccaatacacattcgatataagtacattactggtatcc 240
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagtacagaaccatgtgacgcccaatacacattcgatataagtacattactggtatcc 440
Query: 241 atctattttgcttcttactatctttataatgtaaataagaattcaaacgaaacatatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctattttgcttcttactatctttataatgtaaataagaattcaaacgaaacatatttc 500
Query: 301 ttgtgctttcaggcacagcttcactatattatcacaatccaatatgtagccactattagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgctttcaggcacagcttcactatattatcacaatccaatatgtagccactattagt 560
Query: 361 atatgcagtgttagggtaacaaagttaagattcagagatattaaataacttgatatatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatgcagtgttagggtaacaaagttaagattcagagatattaaataacttgatatatgt 620
Query: 421 cacacaactgaaagtgcaaataaaataagagacatccagttagcttaggtatgtttttct 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 cacacaactgaaagtgcaaataaaataagagacatccagttagcttagttatgtttttct 680
Query: 481 taaaatcccaggaatgatataagtggttttgttgtttgttttacaaaatgaaaatattta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaaatcccaggaatgatataagtggttttgttgtttgttttacaaaatgaaaatattta 740
Query: 541 tgcaacctattttatacatagatgacatatggattttgcttactagaggagttacatgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcaacctattttatacatagatgacatatggattttgcttactagaggagttacatgat 800
Query: 601 gtctctatttgatacatttatgggtaagatttaaagcgcagtttggcgat 650
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtctctatttgatacatttatgggtaagatttaaagcgcagtttggcgat 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
