NNNNNNNNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTATGGCTAGCTGGGAAGCTACTGGCATTTGCTAG
TTGCTGGCAGAGGAAAAGGCAGTTTTCTTTAATGATGTGGTTGACCATAT
AACAGGGCAGGCCCCACTCCCATGACCAGCTGGGCAACACATACTGGNGC
TTGATGGGTAAAGAAAAAAAAATGAAACCTCAAAATTGTTTGGCAACATA
TGGTGGGTGGAGAGGCAATAATAGGAGGACTTAGGAGTGATGAATATGTT
CAAAATACATGTACAAAATTTTCAATGGGCAAAAGCAGAGACAAACCTTT
TGGCTAAATTTCAGAGTCCCAGTAAACTTGATTTTGGCAGTTTTCTCTCC
CCAGATACTCGTATTTGGAAGGGTCTGGCCTCCCCACAGCCTTCTAATAC
ACCATNGTATGTTTCTAAGNTCAATTACTTTTGTTACATTAAAAAAAAAA
TTTTTTTGGTTATGATATACACACATGTGCTTGAATCACAATGTGTNNTG
TGTTGTNTNTNNTTTTNTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAANNNNNNNNNNNTNNTTTTTTTTTTTTTNTTTNTTTTTT
TTTNNNNTTTNNNNTTTNTTTTNTTTTTTTTT

NNGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTGTGATTTAGAAATCACTTG
AAGTTTCAGAAAATAGCTTACTCAAGTTGGTAAGTGCCACCCCACTTTAT
AGTGCTCCTGTTTGCTGCTACAACGCTTGCTTTTCCCAAGTCGCCTGTCA
ATGATTACTTCAGAATCCAGGTGCTGAAGGTTGAGCGAACAGACTAGCTT
TCTTTTTATGGGTGGATTTTCAACAGTGAATGAATGTTACTTTTATTTTG
TGCAAATCAACTCAAAACTTATTTTGAGATAATTTTTTTTAAAAAAAGAA
TTAGCCCCCTGGGAAGAGATGCTGTGTGATATTAGAAAGTCATAAATGAC
CATCCTGTTCGCATTGCTGAGCGTCATCCCTGACCAAGGGCCAAGTGTGC
TTTTCCCTAGGCCATTTCTGTGAATTTTTATCTTGTGTATCTGTCCACAA
AAATGTCTCACTGTACCTAGGCTCAATAACACTTGGACTCTTAGCAGTCA
GAGGCTAAGAAAGGCATAAGGCTAGTGAGTTTGAAGTTAGCCTGGCTATA
TAGTAAGACTCCTCAAAAAAACAAAAACAAAAACAAAAACAAAACAAAAC
CCAAACCCCAAAACCAAAACCAAAAAAACAAAAAAACAAAAGAAAAACAA
ATCTCATCTTAGAAGCTAATATTGAAAACAAAAATCTGCACAGTAGCTTT
TAAAAATATTTGTTTAGTTAT

Query= MSMg01no516_c06.g1 MSMg01no516_c06.g1 CHROMAT_FILE:
MSMg01no516_c06.g1 PHD_FILE: MSMg01no516_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:45 2005
         (675 letters)



>mm_chrX_53721785_53722859
          Length = 1075

 Score = 1237 bits (640), Expect = 0.0
 Identities = 668/686 (97%), Gaps = 15/686 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgtgatttagaaatcacttgaagtttcagaaaatagcttactcaagttggtaagtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtgtgatttagaaatcacttgaagtttcagaaaatagcttactcaagttggtaagtgcc 260

                                                                       
Query: 61  accccactttatagtgctcctgtttgctgctacaacgcttgcttttcccaagtcgcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accccactttatagtgctcctgtttgctgctacaacgcttgcttttcccaagtcgcctgt 320

                                                                       
Query: 121 caatgattacttcagaatccaggtgctgaaggttgagcgaacagactagctttcttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgattacttcagaatccaggtgctgaaggttgagcgaacagactagctttcttttta 380

                                                                       
Query: 181 tgggtggattttcaacagtgaatgaatgttacttttattttgtgcaaatcaactcaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggtggattttcaacagtgaatgaatgttacttttattttgtgcaaatcaactcaaaac 440

                                                                       
Query: 241 ttattttgagataattttttttaaaaaaagaattagccccctgggaagagatgctgtgtg 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattttgagatatttttttttaaaaaaagaattagccccctgggaagagatgctgtgtg 500

                                                                       
Query: 301 atattagaaagtcataaatgaccatcctgttcgcattgctgagcgtcatccctgaccaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atattagaaagtcataaatgaccatcctgttcgcattgctgagcgtcatccctgaccaag 560

                                                                       
Query: 361 ggccaagtgtgcttttccctaggccatttctgtgaatttttatcttgtgtatctgtccac 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccaagtgtgcttttccctaggccatttctgtgaatttttatcttgtgtatctgtccac 620

                                                                       
Query: 421 aaaaatgtctcactgtacctaggctcaataacacttggactcttagcagtcagaggctaa 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaatgtctcactgtacctaggctcgataacacttggactcttagcagtcagaggctaa 680

                                                                       
Query: 481 gaaaggcataaggctagtgagtttgaagttagcctggctatatagtaagactcctcaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaggcataaggctagtgagtttgaagttagcctggctatatagtaagactcctcaaaa 740

                                                                       
Query: 541 aaacaaaaacaaaaacaaaaacaaaa-----------caaaacccaaaccccaaaaccaa 589
           ||||||||||||||||||||||||||           |||||||||||||||||||||||
Sbjct: 741 aaacaaaaacaaaaacaaaaacaaaaacaaaacaaagcaaaacccaaaccccaaaaccaa 800

                                                                       
Query: 590 aaccaaaaaaacaaaaaaacaaaagaaaaacaaatctcatcttagaagctaatattgaaa 649
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaccaaaaaaa----aaaacaaaagaaaaacaaatctcatcttagaagctaatattgaaa 856

                                     
Query: 650 acaaaaatctgcacagtagcttttaa 675
           ||||||||||||||||||||||||||
Sbjct: 857 acaaaaatctgcacagtagcttttaa 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)