Query= MSMg01no516_d20.b1 MSMg01no516_d20.b1 CHROMAT_FILE:
MSMg01no516_d20.b1 PHD_FILE: MSMg01no516_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:53 2005
(660 letters)
>mm_chrX_17739917_17740976
Length = 1060
Score = 1237 bits (640), Expect = 0.0
Identities = 654/662 (98%), Gaps = 6/662 (0%)
Strand = Plus / Plus
Query: 5 gaattcgctgcgtttccatgaaatcctgcggagtgtcgctcgcta------ccgccgccg 58
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 199 gaattcgctgcgtttccatgaaatcctgcggagtgtcgctcgctaccgccgccgccgccg 258
Query: 59 ccgccgccgccgctttcggtgatgaggaaaagaaaatggcggcgggaaaagcgagcggcg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ccgccgccgccgctttcggtgatgaggaaaagaaaatggcggcgggaaaagcgagcggcg 318
Query: 119 agagcgaggaggcgtcccccagcctgacagcggaggagagggaggcgctcggcggactgg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agagcgaggaggcgtcccccagcctgacagcggaggagagggaggcgctcggcggactgg 378
Query: 179 acaggtacggggagcgggcactcgcccgggcggctcgggacaggctggcgccactctccg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acaggtacggggagcgggcactcgcccgggcggctcgggacaggctggcgccactctccg 438
Query: 239 aggaggccggagcgcggctagcctgtggcggccgtggggcgggcacctcggcttggcgct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aggaggccggagcgcggctagcctgtggcggccgtggggcgggcacctcggcttggcgct 498
Query: 299 ctcggctccgctgacgcccgggcctcgggctttggcacggacgggtcggcgccgatgccg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctcggctccgctgacgcccgggcctcgggctttggcacggacgggtcggcgccgatgccg 558
Query: 359 gggcactaacgagcggcgtgtgtctttctccgcagccgccttttcgggttcgtgaggttt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gggcactaacgagcggcgtgtgtctttctccgcagccgccttttcgggttcgtgaggttt 618
Query: 419 catgaagatggcgccaggatgaaggccctgctgggcaaggtaaggcaaaccgcgggccgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 catgaagatggcgccaggatgaaggccctgctgggcaaggtaaggcaaaccgcgggccgg 678
Query: 479 agcgcggacgcggtctctggagccagaggcgcgctcgcctggggcacccgggccgggtca 538
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 679 agcgcggacgcggtctctcgagccagaggcgcgctcgcctggggcaccggggccgggtca 738
Query: 539 ccactcattgtggcctcgaaagacggccgaggggcttccggaaaactatttcctgctact 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccactcattgtggcctcgaaagacggccgaggggcttccggaaaactatttcctgctact 798
Query: 599 gcgctcccctccaccccctgatacctcgcttgctctcttgagagatcacttctcttggag 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gcgctcccctccaccccctgatacctcgcttgctctcttgagagatcacttctcttggag 858
Query: 659 cc 660
||
Sbjct: 859 cc 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_d20.g1 MSMg01no516_d20.g1 CHROMAT_FILE:
MSMg01no516_d20.g1 PHD_FILE: MSMg01no516_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:53 2005
(588 letters)
>mm_chrX_17931139_17932126
Length = 988
Score = 996 bits (515), Expect = 0.0
Identities = 527/531 (99%)
Strand = Plus / Minus
Query: 1 cttgccaggtgattctagattatgtcaagttgataattaacaattaaccaacacagttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cttgccaggtgattctagattatgtcaagttgataattaacaattaaccaacacagttat 472
Query: 61 ttaagaaccaagctgttgatatctcctcagccacgttgatccttattaataatcaggtta 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 471 ttaagaaccaagctgttgatatctcctcagccacattgatccttattaataatcaggtta 412
Query: 121 ggttctttgtgtttaaaataaaaaagaactactttatttacattgagtcatatctttgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggttctttgtgtttaaaataaaaaagaactactttatttacattgagtcatatctttgag 352
Query: 181 attgcagattttgtatttaaagttgcttaatgttatttaaataaaagttctgaacactag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 351 attgcagattttgtatttaaagttgcttaatgttatttaaataaaagttctgaacaatag 292
Query: 241 tttaaagatggcaaaagctaaaaatcttcagtattaggctagagatatttctcagtgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tttaaagatggcaaaagctaaaaatcttcagtattaggctagagatatttctcagtgttt 232
Query: 301 aagagctgctctcccagtgaacctgggttcaactctcagcatctatgtggtggctcacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aagagctgctctcccagtgaacctgggttcaactctcagcatctatgtggtggctcacaa 172
Query: 361 ttgtctgtaactccagttccatgggatctggtgccattttctgatctccagagacaccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 171 ttgtctgtaactccagttccatgggatctggtgccattttctgatctccagaggcaccag 112
Query: 421 gcattcacttggtgcacacggatacatgcaggcaaaacacttgtatacaaaaaaatgaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gcattcacttggtgcacacggatacatgcaggcaaaacacttgtatacaaaaaaatgaaa 52
Query: 481 taaaatattttttaaatatcttcattatttttaaaatatagatttatgtgt 531
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 51 taaaatatttttaaaatatcttcattatttttaaaatatagatttatgtgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
