BAC Information

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BAC

Clone NameMSMg01-516E02
ChromosomeX (Build37)
Map Location 22,622,426 - 22,622,817
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043182, LOC100043956, EG436197, Ppia-psx_207.1, 1700023I07Rik
Downstream geneKlhl13, EG635719, Wdr44, EG236749, EG214450, EG245376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516E02.T7 (MSMg01no516_e02.b1)MSMg01-516E02.TJ (MSMg01no516_e02.g1)
ACCAG588296AG588297
length754749
length of high quality
(start - end)
---393 (317 - 709)
definitionCHROMAT_FILE: MSMg01no516_e02.b1 PHD_FILE: MSMg01no516_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:54 2005CHROMAT_FILE: MSMg01no516_e02.g1 PHD_FILE: MSMg01no516_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTACTTTCTCGTATTTCTTGCTTGATTCGCCCCTGACC
AAGTGTCCTTCATCCTAAAGCTTTTTGGATTTGCTGATCATGTGGACTTT
CTGTTGCTTCGCTTGCTATTCACATCGACTCTTATCCTGATGTTATCTGA
TAGAATGCGTGGGAGTATTCCCGTTTTCTTGAATCACACTGCCGCTTTTG
TGTTGTGACCTATTATATTATCCGTTTATCGCTGAATGTTCCATGAGGAG
ACTCCTACAGAAATAGATTCTCTTGCTTTGGCATGATCTGTTCTATTGAC
ATCTGTTAAATCCATTTGGGCCAAAACATCTGCCAGCTTGACTGAGTCAC
TGTGATTCCCTTTTCTTCTTTTTTTCTTTTTTGATAGGGATGACCTGTTT
CTGCACCTTAGAGGTCTCTCCTAGAAGACTTGCATACAGGCCAGGCCGCT
GATTTAGGCATTGCTAATTTTCTGTACTTGCTACTTGATCATACTGCATG
CGATCTTGTGTTAGAGCCTGGGACATTTCAGAATCATCCTTGAGTGACGT
AACCCAGGCACTTAAGAACACCACTGTGTTCACTCTTTATTATTGGCGGG
TACTTGAGATCAGTACTTACTTCTTCTTTTGATGAACTTTTACCTTGCGT
GTTTTTTATACTACACACATCATGTCTATCATATTGTGTTCGAGTGATGT
TGTT
NNTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTGGAGCGTCTTTTCAGCCCC
GTTACTACGATCACATCAAGGTAGTTTTAGGTGAGACAATCATATAGGAC
CCTGACGACTAGCTCAGGGACCTGTGAATCCAGAGAGACTGATGCATACC
TAATGATGGAGACTTCTCTCCAGGTAACCCTGCTAAAAGCAATTCCAAGA
AGATATGTGCTGTCGCTGGGAGGAGACAGATAAGGTATCCTGGAGGATAA
GTTTGGGCTGTACTTGAGTGTGATTAAGGGTCCGGTACAAGGCCTCAGAC
AACACAGTGCTCTTGCCTCCTGGCTAAAAGAACGAGGAAGCTGCAGTGAC
CACTTTGGCTGCATGAGCACAGAACTCCCAAATGCACATCAGACGAAGCA
ACCTTTTAAGTTACTTTCTCAGTTACCATAAAACACTTTATAAACTTCTC
TACTCAAGTCCCTTTGTGCTTTGCAGGCTGGTAGACTGGACTGTGTAAAA
TTCATCCCTTTTTGGCAAAGGCATCCCTAAGGGCAGTGAGCATGCTCTTT
AGTGATAGATTAGTATGCAAGTTATAATGTGTGGAACTAGGAGAAACCCA
TAGCTCTTTTCTTTAAACACATATCCATACTGCTATGTTGCAATTTTTCA
TATCAAATTTTTCTAAAGGCTGTCTATATTTTTAGGCTATCACACTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_e02.g1 MSMg01no516_e02.g1 CHROMAT_FILE:
MSMg01no516_e02.g1 PHD_FILE: MSMg01no516_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:54 2005
         (393 letters)



>mm_chrX_22622225_22623017
          Length = 793

 Score =  714 bits (369), Expect = 0.0
 Identities = 387/393 (98%), Gaps = 2/393 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gtgtgattaagggtccggtacaaggcctcagacaacacagtgctcttgcctcctggctaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtgtgattaagggtccggtacaaggcctcagacaacacagtgctcttgcctcctggctaa 261

                                                                       
Query: 62  aagaacgaggaagctgcagtgaccactttggctgcatgagcacagaactcccaaatgcac 121
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagaacgaggaagcagcagtgaccactttggctgcatgagcacagaactcccaaatgcac 321

                                                                       
Query: 122 atcagacgaagcaaccttttaagttactttctcagttaccataaaacactttataaactt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atcagacgaagcaaccttttaagttactttctcagttaccataaaacactttataaactt 381

                                                                       
Query: 182 ctctactcaagtccctttgtgctttgcaggctggtagactggactgtgtaaaattcatcc 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 382 ctctactcaagtccctttgtgctttgcaggctggtagactggactgtgtaaaatgcatcc 441

                                                                       
Query: 242 ctttttggcaaaggcatccctaagggcagtgagcatgctctttagtgatagattagtatg 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 442 ctttttggcaaaggcatccctaagggcagtgagcatgctctttagtgatagattagtaag 501

                                                                       
Query: 302 caagttataatgtgtggaactaggagaaacccatagctcttttctttaaacacatatcca 361
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 502 caagttataatgtgtggaactaggagaagcccatagctcttttctttaaacacatatcca 561

                                            
Query: 362 tactgctatgttgcaatttttca-tatcaaatt 393
           |||||||||||||||||||| || |||||||||
Sbjct: 562 tactgctatgttgcaatttt-caatatcaaatt 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)