Query= MSMg01no516_f17.b1 MSMg01no516_f17.b1 CHROMAT_FILE:
MSMg01no516_f17.b1 PHD_FILE: MSMg01no516_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:03 2005
(626 letters)
>mm_chrX_19554117_19555142
Length = 1026
Score = 1098 bits (568), Expect = 0.0
Identities = 607/622 (97%), Gaps = 5/622 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcaattgttcttcaacatctactcagattattgtgcttattttatctcattag 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcatcaatggttcttcaacatctactcagattattgtgcttattttatctcattag 267
Query: 65 tagtgtttattatacttattactatataataaatcaattcacacttttgagataaattcc 124
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 268 tagggtttattatacttattactatataataaatcaattcacactattgagataaattcc 327
Query: 125 acttgtccatgtatgatttttgatatgatacataattggatttggtagtattttatttag 184
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||
Sbjct: 328 acttgtccatgtatgatttttgat---atacataattggacttggtagtattttattgag 384
Query: 185 ggttaatatatctatgttcataaaagatatcaataattgtatgctttttatgtttatttg 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 ggttaatatatctatgttcataaaagatatcaatatttgtatgctttttatgtttatttg 444
Query: 245 tttgactttggcatcagggtaattaatactcatttttttgtttgtttgttttctgaacat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttgactttggcatcagggtaattaatactcatttttttgtttgtttgttttctgaacat 504
Query: 305 tcataagaataagtgctgggctggagagatggctcagctgttaaaggctaggctcacaac 364
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 505 tcataagaataagtgctgggctggagagatggatcagctgttaaaggctaggctcccaac 564
Query: 365 taaaaatataagaataagtgctaaacatactaattgtagtcaggcagtggtggcacatag 424
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 taaaaatataagaataagtgctaaacatactaatcgtagtcaggcagtggtggcacatag 624
Query: 425 ttttgatcccagaacttgggaggcagaggcaggtggatctttgtaggccagtctggtcta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttgatcccagaacttgggaggcagaggcaggtggatctttgtaggccagtctggtcta 684
Query: 485 cagagtgagttccaggacagccagggctacaaagagaaaccctatcacccctccaaaaaa 544
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caaagtgagttccaggacagccagggctacaaagagaaaccctatcacccctccaaaaaa 744
Query: 545 aacccaaaatattaattcttctttaatattacatagaatttaccagtgaaaccatctgaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 --cccaaaatattaattcttctttaatattacatagaatttaccagtgaaaccatctgaa 802
Query: 605 cttggacttctctttctgtgca 626
||||||||||||||||||||||
Sbjct: 803 cttggacttctctttctgtgca 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_f17.g1 MSMg01no516_f17.g1 CHROMAT_FILE:
MSMg01no516_f17.g1 PHD_FILE: MSMg01no516_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:03 2005
(566 letters)
>mm_chrX_19704107_19705072
Length = 966
Score = 611 bits (316), Expect = e-179
Identities = 328/332 (98%)
Strand = Plus / Minus
Query: 1 tgaagcatcccattggagttatcagagatagcatggaaatcggctctcattttagaattc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 332 tgaagcatcccattggagttatcagagatagcatggaaatcgactctcattttagaattc 273
Query: 61 ttagtttaagagtttaagactcagacagaagctcaaaggcaatttattagagcttaaaag 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttagtttaagagtttaagactcaaacagaagctcaaaggcaatttattagagcttaaaag 213
Query: 121 aaaaacttctaaggctggagaggtggctgagcatttagaaatctggccactcttccagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aaaaacttctaaggctggagaggtggctgagcatttagaaatctggccactcttccagag 153
Query: 181 gactggggttcagttcccagcgtccatagtgtggcttataaccacccaaactccagtttt 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gaccggggttcagttcccagcgtccatagtgtggcttataaccacccaaactccagtttt 93
Query: 241 aggagatcctacagccctgttctgatttctttgggcatcaggcacacaaaggctacataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 aggagatcctacagccctgttctgatttctttgggcatcaggcacacaaaggctacataa 33
Query: 301 atatatatgcaggcaaacattcatttacataa 332
||||||||||| ||||||||||||||||||||
Sbjct: 32 atatatatgcatgcaaacattcatttacataa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
