Query= MSMg01no516_g05.b1 MSMg01no516_g05.b1 CHROMAT_FILE:
MSMg01no516_g05.b1 PHD_FILE: MSMg01no516_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:06 2005
(457 letters)
>mm_chrX_34303196_34304052
Length = 857
Score = 826 bits (427), Expect = 0.0
Identities = 446/453 (98%), Gaps = 2/453 (0%)
Strand = Plus / Minus
Query: 5 gaattcttacagtcacttgattctgcaactccctatacaaagggcttctatacagcacgc 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaattcttacagacatttgattctgcaactccctatacaaagggcttctatacagcacgc 433
Query: 65 acagtgaagtcggtgagggaaacatgccaagctaatgggccggcctttattctctaaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 acagtgaagtcggtgagggaaacatgccaagctaatgggccggcctttattctctaaagg 373
Query: 125 tgatagaggagccacagtgacagggcaaaagaacatttgttctgcaagaaacccatggac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgatagaggagccacagtgacagggcaaaagaacatttgttctgcaagaaacccatggac 313
Query: 185 tgaagtgagctctgatcctggaggcaaacctgcatgcatggcctttgtcccagttccgtt 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgaagtgagctctgatccgggaggcaaacctgcatgcatggcctttgtcccagttccgtt 253
Query: 245 gctcaaagatgggcttgtaatctacagtgcctcagttttctcatctcagtaggcaagatg 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 252 gctcaaagatgggcttgtaatctacagtgcctcagttttctcatctcaataggcaagatg 193
Query: 305 gctcaacaggtaaaagtgcttgctgccaagacttgacgatctgagtttaagctccagaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gctcaacaggtaaaagtgcttgctgccaagacttgacgatctgagtttaagctccagaac 133
Query: 365 ctgccctgcgtggcggacagagatcactgactcccgtaagttgtctgacttctttctgta 424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 132 ctgccctgcgtggcggacagagatctctgactcccgtaagttgtctgacttctttctgta 73
Query: 425 tgtgtgcactgtgacacacacacacacacacac 457
|||||||||||||||||||||||||||||||
Sbjct: 72 --tgtgcactgtgacacacacacacacacacac 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_g05.g1 MSMg01no516_g05.g1 CHROMAT_FILE:
MSMg01no516_g05.g1 PHD_FILE: MSMg01no516_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:06 2005
(603 letters)
>mm_chrX_34104312_34105314
Length = 1003
Score = 1166 bits (603), Expect = 0.0
Identities = 603/603 (100%)
Strand = Plus / Plus
Query: 1 ttggaagggggaccgggaagggggggcaacatttggaatgtaaataaatcaaataatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggaagggggaccgggaagggggggcaacatttggaatgtaaataaatcaaataatttt 260
Query: 61 caaaagaaacccattattttatataatcatgtatgctaatgaaatactaaaatagtatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaagaaacccattattttatataatcatgtatgctaatgaaatactaaaatagtatta 320
Query: 121 aagcaacacatgaggccaaaatgtgtcttaaactcttgtgagctttcattttttatattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcaacacatgaggccaaaatgtgtcttaaactcttgtgagctttcattttttatattc 380
Query: 181 tcagcacaactttgtcatctctaaatctgttcaatgtactcacaaaccatttacatttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagcacaactttgtcatctctaaatctgttcaatgtactcacaaaccatttacatttgt 440
Query: 241 aaagaaaaaccattttcatttgtaaagaaaaatatttgtaaagaaaaaccatttccattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaaaaaccattttcatttgtaaagaaaaatatttgtaaagaaaaaccatttccattt 500
Query: 301 gtaaagaaatttgtaaagaaaatttgtaaagaatttgtaaagaatttgtaaagaaatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaaagaaatttgtaaagaaaatttgtaaagaatttgtaaagaatttgtaaagaaatttg 560
Query: 361 taaagaaaaaacattttcatttgtaaagaaaaataaaccagctcattaattcttaatttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagaaaaaacattttcatttgtaaagaaaaataaaccagctcattaattcttaatttt 620
Query: 421 aaaactttacctaatctttcaaattggctataaattgcatccacagaataatgtagcttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaactttacctaatctttcaaattggctataaattgcatccacagaataatgtagcttc 680
Query: 481 caaagagacacatgtgtagctcttcttaagacacttaagcctgtgtgtttattcatgccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaagagacacatgtgtagctcttcttaagacacttaagcctgtgtgtttattcatgccc 740
Query: 541 acactccttgagtgggttgtctcgtttcattaataaactctaaatcagcttcaaactggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acactccttgagtgggttgtctcgtttcattaataaactctaaatcagcttcaaactggt 800
Query: 601 ttg 603
|||
Sbjct: 801 ttg 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
