Query= MSMg01no517_a04.b1 MSMg01no517_a04.b1 CHROMAT_FILE:
MSMg01no517_a04.b1 PHD_FILE: MSMg01no517_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:57 2005
(468 letters)
>mm_chrX_91318512_91319379
Length = 868
Score = 874 bits (452), Expect = 0.0
Identities = 461/464 (99%)
Strand = Plus / Plus
Query: 5 gaattcccatcctggagttcagtttcttacagggctgccggcagtgagctgtataagtct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccatcctggagttcagtttcttacagggctgccggcagtgagctgtataagtct 264
Query: 65 gcccacatttttcaggattttgatgtatgtgtatgtgtgtgcatctgtgtaagtagatat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcccacatttttcaggattttgatgtatgtgtatgtgtgtgcatctgtgtaagtagatat 324
Query: 125 catgtatgtgtcaagtgcccttggaggccagaaacagctatcagatccctgggagccagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgtatgtgtcaagtgcccttggaggccagaaacagctatcagatccctgggagccagt 384
Query: 185 tacagctgctctacctagggaactgaactcaggtcatctagaaacactccaagtgtgttt 244
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 tatagctgctctacctagggaactgaactcaggtcatctagaagcactccaagtgtgttt 444
Query: 245 gagtactgagccaccttctccagccccaacatgtggtttcttgtgcacattcccaacata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagtactgagccaccttctccagccccaacatgtggtttcttgtgcacattcccaacata 504
Query: 305 attaggattcaagaagagaggacaggtgtagcagaacctccaaaacctcaacatagagct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attaggattcaagaagagaggacaggtgtagcagaacctccaaaacctcaacatagagct 564
Query: 365 ctaccatttccaagaagcagctcaggtaaaagaaatgggctcagccgggcggtagtgtca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaccatttccaagaagcagctcaggtaaaagaaatgggctcagccgggcggtagtgtca 624
Query: 425 cacgcctgtagtcccagcacttgggagtcagaggcaggcagatt 468
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacgcctttagtcccagcacttgggagtcagaggcaggcagatt 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_a04.g1 MSMg01no517_a04.g1 CHROMAT_FILE:
MSMg01no517_a04.g1 PHD_FILE: MSMg01no517_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:57 2005
(555 letters)
>mm_chrX_91456845_91457805
Length = 961
Score = 967 bits (500), Expect = 0.0
Identities = 547/573 (95%), Gaps = 18/573 (3%)
Strand = Plus / Minus
Query: 1 ctggagttaagctttgttaataaacagaatggagatgattaatatagcgtagagtgtatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ctggagttaagctttgttaataaacagaatggagatgattaatatagcgtagagtgtatg 771
Query: 61 cttagcatccacgcagccctgagttccatccggagaggcgcacgcctgtaatcctagcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cttagcatccacgcagccctgagttccatccggagaggcgcacgcctgtaatcctagcac 711
Query: 121 ttaggagatgaaaataggaagattagaagataaaggacatttttggctctatatctggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ttaggagatgaaaataggaagattagaagataaaggacatttttggctctatatctggtt 651
Query: 181 ggaggccagtatgagactaacgagactgttaaaaagttgttaaggtttaagtctgtaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ggaggccagtatgagactaacgagactgttaaaaagttgttaaggtttaagtctgtaaag 591
Query: 241 gattggaaattggactatactgttcactgtgttagacatttgaggacttgttatgactcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gattggaaattggactatactgttcactgtgttagacatttgaggacttgttatgactcc 531
Query: 301 agtatttggtggcctttcattgccagacctctcttagtgaatggacttgtcttagtgtga 360
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 530 agtatttggtggcctttcatcgccagacctctcttagtgagtggacttgtcttagtgtga 471
Query: 361 caatgaca-----ggc-ttatagtcttcccagtcttaacagcatgttaccggcggggtgg 414
|||||||| | | |||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 470 caatgacactatagtcattatagtcttcccagtcttaacagcatgttgccggcggggggg 411
Query: 415 gggg------------ctttagcaggagaagagagctgtttatacagagcatacagttgt 462
|||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 410 ggggggggggggggggctttagcaggagaagagagctgttcatacggagcatacagttgt 351
Query: 463 acccgaggaatataaagtcaagggaaaacttgtggtttgtattgattatattttacaata 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 acccgaggaatataaagtcaagggaaaacttgtggtttgtattgattatattttacaata 291
Query: 523 tatttcttttcangatgttaccaagttgacacc 555
|||||||||||| ||||||||||||||||||||
Sbjct: 290 tatttcttttcaggatgttaccaagttgacacc 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 961
Length adjustment: 10
Effective length of query: 545
Effective length of database: 951
Effective search space: 518295
Effective search space used: 518295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
