XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTCATAGACTTAGATCTTTGGGTACAGAATTAGCATTACAAGACATAGA
CCAAACCTCAATCTATACAAAGAACTACAGGCAACTAAAGAATGCTGAAA
GGGGGTGAAATTCTTTCCCTGTGAAAAAGATACAACTGATTTTCCTAAAA
AACGTGCATACAAGTAACATTATACATACTGAGCAGGTTGTATTAGGAAT
TTGTATGTATATGCATATACATGTATGCATAAATATATGTATGTAATGAT
AATTAAGGTAAAAAGAGGCAATGGGTGAGAAATAGTGCAAAGAGAGTATA
CAGAAAGACTTGAAGGAGAAAAGGAAAGGGAAATGGTATAATTGCACAAC
AATCTCAAAATATAAAAGAAATAATATTTATAAAAACCAAGTCCTGAACA
GTGTAAATAATAGATGACATATCAAAAAATAGGTGGTGAATCACATGGGG
ACTGACCCCAGATGAAGGGTTTCAAATAATCAACTGTTGAGAGAGGAAGA
ACCATCCTTCCCCAAGGATGAATCCCTGAATGGTTGGTTATATAAAACCA
AATGGTCAGTCCTAGAAATATACACTTGTCCCTATTTAAGGACCTCATTT
GTCTCCATTTTGAGGACCAGGCCTGGTTTCAAAAAAGGCCATAAAGCACC
AGCTTCAAGAATAGACCATAATAAGTCCCAGAAGCTTA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTCTTTCTAACAACTGGCCACCATACATCT
CTTAATATCTTCTATTGTCTTAGAGAAGCAGGGCTATCTCTGGAACGCTA
TTACTCTTATGACTTTCATCTCTGTTTGAATTGCAACATAGTTCAACATG
AAGCCATAGTTGTGTTTCAAAGGAAAATAGAATGCATTTTACATGTTTAT
AACTATTTGAGATACAGACACACTAATCATAAAAGATGGAGGTCAAATAT
CTCTTTTATAGTTGTCAAAACACAAATTGGACTACCTGCCTTCTGTACCT
TCTTCCACATGCAGAGGATAACTGTAAACCACCTTGGGAAAAAAACTTAA
AGGTTTATTGCATGCCCAACTCTTCTCAACCTTATTAATGGAGAAAAATA
TTGACAGATATGATTTATTGAAATATGAATTTTATTGGACAATGGCGATA
CATAATTTGTGGCTAGAGAAAATATGATTTCACTTGGCACAGCTAGTAAA
TTGAATACCATATCAAAGCCCAATTTTAAATGGATTATAGTTTATGGAGT
AAATACTTAAAATACTGTTTAATTCTGTTGACTTTTGAGGTCAACTGTGA
ACTCCCCACTTATCTCATCTCAGAAAGCAAAAACATATATTGAAAGATGT
TGGACCCTCATCAAATGGGGCCGTAACACTTCTGACTTC

Query= MSMg01no517_g02.b1 MSMg01no517_g02.b1 CHROMAT_FILE:
MSMg01no517_g02.b1 PHD_FILE: MSMg01no517_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:26 2005
         (698 letters)



>mm_chrX_31999581_32000678
          Length = 1098

 Score = 1176 bits (608), Expect = 0.0
 Identities = 674/696 (96%), Gaps = 3/696 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcatagacttagatctttgggtacagaattagcattacaagacatagaccaa 64
           ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 gaattaactcatagacttagatctttgggtacagaattagcattacaatacatagaccaa 263

                                                                       
Query: 65  acctcaatctatacaaagaactacaggcaactaaagaatgctgaaagggggtgaaattct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acctcaatctatacaaagaactacaggcaactaaagaatgctgaaagggggtgaaattct 323

                                                                       
Query: 125 ttccctgtgaaaaagatacaactgattttcct-aaaaaacgtgcatacaagtaacattat 183
           |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct: 324 ttccctgtgaaaaagatacaactgattttcctaaaaaaacttgcatacaagtaacagtat 383

                                                                       
Query: 184 acatactgagcaggttgtattaggaatttgtatgtatatgcatatacatgtatgcataaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acatactgagcaggttgtattaggaatttgtatgtatatgcatatacatgtatgcataaa 443

                                                                       
Query: 244 tatatgtatgtaatgataattaaggtaaaaagaggcaatgggtgagaaatagtgcaaaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatatgtatgtaatgataattaaggtaaaaagaggcaatgggtgagaaatagtgcaaaga 503

                                                                       
Query: 304 gagtatacagaaagacttgaaggagaaaaggaaagg-gaaatggtataattgcacaacaa 362
           ||||||| ||||||||||||||||||||||||| || |||||||||||| ||| ||||||
Sbjct: 504 gagtatatagaaagacttgaaggagaaaaggaa-ggagaaatggtataaatgcgcaacaa 562

                                                                       
Query: 363 tctcaaaatataaaagaaataatatttataaaaaccaagtcctgaacagtgtaaataata 422
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 tctcaaaatatgaaagaaataatatttacaaaaaccaagtcctgaacagtgtaaataata 622

                                                                       
Query: 423 gatgacatatcaaaaaataggtggtgaatcacatggggactgaccccagatgaagggttt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gatgacatatcaaaaaataggtggtgaatcacatggggactgaccccagatgaagggttt 682

                                                                       
Query: 483 caaataatcaactgttgagagaggaagaaccatccttccccaaggatgaatccctgaatg 542
           |||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 683 caaaaaatcaaatgttgagagaggaagaaccatctttccacaaggatgaatccctgaatg 742

                                                                       
Query: 543 gttggttatataaaaccaaatggtcagtcctagaaatatacacttgtccctatttaagga 602
           ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 743 gttggttatataacaccaaatggtcagtcttagaaatatacacttgtccccatttaagga 802

                                                                       
Query: 603 cctcatttgtctccattttgaggaccaggcctggtttcaaaaaaggccataaagcaccag 662
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 803 cctaatttgtctccattttgaggaccaggcctggtgtcaaaaaaggccataaagcaccag 862

                                               
Query: 663 cttcaagaatagaccataataagtcccagaagctta 698
           |||||||||||||||||| |||||||||||||||||
Sbjct: 863 cttcaagaatagaccatagtaagtcccagaagctta 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)