Query= MSMg01no517_k05.b1 MSMg01no517_k05.b1 CHROMAT_FILE:
MSMg01no517_k05.b1 PHD_FILE: MSMg01no517_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:47 2005
(706 letters)
>mm_chrX_66029867_66030972
Length = 1106
Score = 977 bits (505), Expect = 0.0
Identities = 509/511 (99%), Gaps = 2/511 (0%)
Strand = Plus / Minus
Query: 196 agctctgagataggcagagacaggaagattcatggggctcattggtttccaggctatcca 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 agctctgagataggcagagacaggaagattcatggggctcattggtttccaggctatcca 1047
Query: 256 agaaaacatgaaccccaatttcagagataaagccttaacttaagggaataagcagagagt 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 agaaaacatgaaccccaatttcagagataaagccttaacttaagggaataagcagagagt 987
Query: 316 taactcagaggacttttagtgccatcttctggcctccatgtgcacacaaatgcacacaca 375
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 986 taactcagaggacttttagtgccatcttctggcctccatgtgcacacaaatg--cacaca 929
Query: 376 cacaaagacatacacatataaacacatattttatattttaaaatggcatccatcttcaac 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 cacaaagacatacacatataaacacatattttatattttaaaatggcatccatcttcaac 869
Query: 436 atcactggacactgtacattacataacaaagcaagtcctgaagtaatatgcttggttctg 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 atcactggacactgtacattacataacaaagcaagtcctgaagtaatatgcttggttctg 809
Query: 496 gagaatgctgtagtcttcaacactgctttcacctctcccacctgttctcattttccttgc 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gagaatgctgtagtcttcaacactgctttcacctctcccacctgttctcattttccttgc 749
Query: 556 tccagttgctctcttggtggtatataaataaaaaatactgctcaaatttaaaagccaaga 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tccagttgctctcttggtggtatataaataaaaaatactgctcaaatttaaaagccaaga 689
Query: 616 aaatatcaaaaccttgcttgttttggtttgcaactgaagacttggagaggtgtttcaaca 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aaatatcaaaaccttgcttgttttggtttgcaactgaagacttggagaggtgtttcaaca 629
Query: 676 gttttcttcctaaggaacattttactggctc 706
|||||||||||||||||||||||||||||||
Sbjct: 628 gttttcttcctaaggaacattttactggctc 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no517_k05.g1 MSMg01no517_k05.g1 CHROMAT_FILE:
MSMg01no517_k05.g1 PHD_FILE: MSMg01no517_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:47 2005
(624 letters)
>mm_chrX_65850115_65851138
Length = 1024
Score = 1183 bits (612), Expect = 0.0
Identities = 621/624 (99%)
Strand = Plus / Plus
Query: 1 ttcagcctgattccacatcatattcaggcatctccttgagatctttcttcctggaacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagcctgattccacatcatattcaggcatctccttgagatctttcttcctggaacagg 260
Query: 61 ccataacttaactcttgtaaatccccacaaatgaggtttcaacaaagcaccaccatttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccataacttaactcttgtaaatccccacaaatgaggtttcaacaaagcaccaccatttgg 320
Query: 121 aatgggcttgattacacagcctagagagtggacatgctttttcatgagattcctcctgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgggcttgattacacagcctagagagtggacatgctttttcatgagattcctcctgat 380
Query: 181 atagaggtaagctagaatgagaaaaatgcctaacccctctttttaatgcacagcttttag 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagaggtaagctagaatgagaagaatgcctaacccctctttttaatgcacagcttttag 440
Query: 241 cagcgtaaaaattctgaattggatcccagcattcaaaactgttataaaggtgtttttgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcgtaaaaattctgaattggatcccagcattcaaaactgttataaaggtgtttttgtc 500
Query: 301 aaagcagaaaggtaacacttaatagtctgttactgtgatttataactgttaaatatttag 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 aaagcagaaaggtaacacttaatagtctgttactatgatttataactgttaaatatttag 560
Query: 361 aggaaatgatatgcagagttcacaaagttctcttgtgctctgcaaagggtatgaatgtgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaaatgatatgcagagttcacaaagttctcttgtgctctgcaaagggtatgaatgtgc 620
Query: 421 tggttagtttttgtcagttgacacaaactagcgttcactgtgaggagaaacctcatgtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggttagtttttgtcagttgacacaaactagcgttcactgtgaggagaaacctcatgtaa 680
Query: 481 ggaattgtcaccatcatattggctagtgggcatatccatgaggatattttctcagttgct 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 ggaattgtcaccatcatattggctagtgggcatatctatgaggatattttctcagttgct 740
Query: 541 gattgatatttgaagacccagcccactgtggacttttctatccctggtcaaatgggcctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gattgatatttgaagacccagcccactgtggacttttctatccctggtcaaatgggcctg 800
Query: 601 atcaagttagctaagcaagccagg 624
||||||||||||||||||||||||
Sbjct: 801 atcaagttagctaagcaagccagg 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
