NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATTTTAGTCCAGGAAACAGGATTCTTAAATGCTTATTAGAAA
AAGTTCTGTCCCAAGGAGATTTTTTTATCCATGCAAAGTCCCTAAAATGA
ATTTTTAGAATTAGAAATCATCTTTAATTAAACATGGTATGGATAAAGCC
ATCATGCAGCAATTCATTAACCTGATTTTTTCATAGCTTCAAGAATAGGA
GAAGGAATAAAAAAATGGACAAAATACAACATCTAAATTAACAAAATGTG
GTATCTGTGTATTGGCTTCTAGGTTGCTAATTTTTCCACAGCAGACTGAT
GCTCATTAGCCATTAGTTTGTCAGTAAGAAAGCCAAATATTTACATATCC
TATTGTTTTAGATATATCCTCAAGTAAACAAACATTTTTACATTTAGAGT
CTGCGTGCTTTGAAACTCCATCAAATACCACCCAAAGTCTGCTACCTGTA
GATAAGCTTCCGGACTGTACAAACCCTCTGTGCTGTTGGTGCTCTTTACA
GCTCTCAAACCCAGACTCCACACTGGGCGGCTGGGCTGCCATCACTCACA
TATCCATCCTCTTAAATTGCATCCTTCCAGAGATTTCCTCTTCTGAGTGA
TGATGATACCCCATTCTCTAAGTAAGTCATATTGTAAGTCCACAAGCAAA
CTGATATTCTGAATATTCTACTATATGTGCTATGATGGAAATTTATCACA
AGCA

NCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCTAACCCTAGTGTCCAAAG
CACATGACAACAGTAAAGATCCAATCTTACCCCTCCCACCATATGATTAA
TGTCATTAATAAATTTTCTGCTGTCTCAAGCAAATTCATTGGAGGGTAAA
TACCTTAACATTCAGCTGGATGGTGGTGGCTCATGCCTTTAATCCCAGAA
CTCAGGAGGCAGATCTAGGCATATCTCTGAGTTTGAGGTCAGCCTGGTCT
ATATAGTATGTCTCAGGACAGCCAGGGGTACAGGGAGAGATCCTGTCTTG
GAAAACAAATAAAATAATACAAATATAAATATAAACAAAACAATGCAACA
TTCTTAACTGGAAAGTATTTGGCTATAGATGCTGAATGAAAGCCTTTTCT
AAAGCTAAACTATATGCTGTCAGCAATTGGTAATTTATCTCCACAATACA
ATAATAAGAAATACTGAAACTATGTGTACTTCCGTCTGATAACACATAAG
TCATTAATATACCATACAGAATCAAAAATAATTGTCAGAGTATTCCTTCT
AAATAAAATAATAATAATAAAAATAATTCCTTCTAAAGGCTCGGAATAAT
TTGTCCTGTGTGTCCTTTGCTTCCACTTTTTTTTTTTCTTNCACACAACC
AAAGTACTTTTCACGAAGAAAATAGTTATAAATTGGAGCCTTGGACCCTT
TGTTTATTCCTTNAATACCCCTG

Query= MSMg01no518_f13.b1 MSMg01no518_f13.b1 CHROMAT_FILE:
MSMg01no518_f13.b1 PHD_FILE: MSMg01no518_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:43 2005
         (707 letters)



>mm_chrX_4668821_4669927
          Length = 1107

 Score = 1218 bits (630), Expect = 0.0
 Identities = 687/706 (97%), Gaps = 4/706 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattttagtccaggaaacaggattcttaaatgcttattagaaaaagttctgtcc 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattttagtccaggaaacaggatacttaaatgcttattagaaaaagttctgtcc 264

                                                                       
Query: 65  caaggagatttttttatccatgcaaagtccctaaaatgaatttttagaattagaaatcat 124
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 caaggagaattttttatccatgcaacgtccctaaaatgaatttttagaattagaaatcat 324

                                                                       
Query: 125 ctttaattaaacatggtatggataaagccatcatgcagcaattcattaacctgatttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttaattaaacatggtatggataaagccatcatgcagcaattcattaacctgatttttt 384

                                                                       
Query: 185 catagcttcaagaataggagaaggaataaaaaaatggacaaaatacaacatctaaattaa 244
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 385 catagcttcaagaataggagaaggaataaaataatggacacaatacaacatctaaattaa 444

                                                                       
Query: 245 caaaatgtggtatctgtgtattggcttctaggttgctaatttttccacagcagactgatg 304
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaatgtgatatctgtgcattggcttctaggttgctaatttttccacagcagactgatg 504

                                                                       
Query: 305 ctcattagccattagtttgtcagtaagaaagccaaatatttacatatcctattgttttag 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcattacccattagtttgtcagtaagaaagccaaatatttacatatcctattgttttag 564

                                                                       
Query: 365 atatatcctcaagtaaacaaacatttttacatttagagtctgcgtgctttgaaactccat 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatagcctcaagtaaacaaacatttttacatttagagtctgcgtgctttgaaactccat 624

                                                                       
Query: 425 caaataccacccaaagtctgctacctgtagataagcttccggactgtacaaaccctctgt 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaataccacccaaagtctgctagctgtagataagcttccggactgtacaaaccctctgt 684

                                                                       
Query: 485 gctgttggtgctctttacagctctcaaacccag-act-ccacactgggcggctg-ggctg 541
           ||||||||||||||||||||||||||||||||| | | || ||||||||||||| |||||
Sbjct: 685 gctgttggtgctctttacagctctcaaacccaggatttcc-cactgggcggctgtggctg 743

                                                                       
Query: 542 ccatcactcacatatccatcctcttaaattgcatccttccagagatttcctcttctgagt 601
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 744 ccatcactcacatatccatcctcttcaactgcatccttccagagatttcctcttctgagt 803

                                                                       
Query: 602 gatgatgataccccattctctaagtaagtcatattgtaagtccacaagcaaactgatatt 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gatgatgataccccattctctaagtaagtcatattgtaagtccacaagcaaactgatatt 863

                                                         
Query: 662 ctgaatattctactatatgtgctatgatggaaatttatcacaagca 707
           || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 864 ctaaatattctgctatatgtgctatgatggaaatttatcacaagca 909


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space:   764609
Effective search space used:   764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)