BAC Information

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BAC

Clone NameMSMg01-518M09
ChromosomeX (Build37)
Map Location 7,733,055 - 7,733,719
singlet/doubletsinglet
Overlap geneTbc1d25
Upstream geneClcn5, Usp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3
Downstream geneEbp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263, Ssxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518M09.T7 (MSMg01no518_m09.b1)MSMg01-518M09.TJ (MSMg01no518_m09.g1)
ACCAG590202AG590203
length746744
length of high quality
(start - end)		609 (71 - 679)666 (79 - 744)
definitionCHROMAT_FILE: MSMg01no518_m09.b1 PHD_FILE: MSMg01no518_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:17 2005CHROMAT_FILE: MSMg01no518_m09.g1 PHD_FILE: MSMg01no518_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTGTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAAGAATACGGTACACCAAGCACCAAATACAAACAGAGGG
GAAAATAGCTGCTAGTGTTTTACGAGACCCTTTAGTGACTAGTTTGTAGC
TACCTATGGTGAGTTTGTAAGGGATGAAGAGAAGCCAGAGTTCCCTTCTT
ATGCCTGTAACACAGGGTAGTTGGGAGGCTGAGGTAGAAGGGTCATATGT
TCAATGCCTGTCTGAGTCAACTATAAAGTGAGGTCTAGGCCAGTCTGGGT
AATATATAATTAAATCCTGTATCATAGACTCAATCAGGGTTTAAGTTGTA
GCTTAGTAGTAGGATTCTTATGTAACATATGAGTGGCCCTTGCATTAATT
CCCTAGTTTTACAAAAAAAAAATAGTACAAGAGAAAAGTCATAAAGTTTC
ACTCATCTTGAAATGAATAGGGAAAATCAGAGAAATATGATGAATTAGCC
ATATTTGATAAGCAGACACAGTTGTGACTTGAACCATCATACTTTTCCTA
TATGATGCCTCCCATGATCCTTTCCTGAAGTCTCTTCCAGCTCTGGGTGA
TTGCTTAACATTTCTAGAATTTTCCCTTCATGAGTAAATAAATGCTTTGA
CTTTTTATTTTATTACAAATTTAATAGGTACAGAGAGGCTTCACCCAGCA
CCTGATGGAAAAAGATGCACAGACCCACAGTCAAACATTAGGCAGA

GGTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTCCTCAGGGTTCACTCGC
TGGGCCCACTCACTTTTGAGCTGCTCGTACTCTCGGCTCTTACGTTTCAT
GTAGTCCATCCGCTCACGGCCAGTCAGCCCATCTGGGTACACATTAAGGA
GGTACCGCCATACTACCTGCCAGAGACAGAAGAGATGGGGCTGAGTTTCA
ACTAGTGAGCTGCCGTACGTACCCATGTATGTCAACTAGTTACCACCCAT
CTCTTGTGACCTCTGTCCTCCTTGTGATAGGTCTGCCTTCCTGCCACTGG
GACATACCCGACAGAGACCCTCCTTCCCTGGGATTTCTCTATCCCACCTA
TGACTGTGTTCTACTGAACATTTGATAGAGTGTGATGGGTTCGGTGACGG
ACTGAGGCGGCTCACTTTTCGAAGTGAAGGCTCCACACCGCCGTGGTAGA
TCCTCAAACGCAACTCCTCAGGCCGGGAGAGCTGACCTTCATGATTCAGG
TACGTGTGGAACTCAGCATCACTCAGGGGGGGCTTAAAAGGCTTCACATC
TTCCCCATAAGACCAACTCAGCACCTGCTGGACCTTAGACAGTGTACGAC
CCACCTGGGAAGGAAAAAGGGAAAGAAGCTACAGGTCCCCTGTGCAGGAT
AGGGCAGACATCAACCATCGGGCTCTGGAATGGTATTATCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_m09.g1 MSMg01no518_m09.g1 CHROMAT_FILE:
MSMg01no518_m09.g1 PHD_FILE: MSMg01no518_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:17 2005
         (666 letters)



>mm_chrX_7732855_7733920
          Length = 1066

 Score = 1255 bits (649), Expect = 0.0
 Identities = 661/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtcctcagggttcactcgctgggcccactcacttttgagctgctcgtactctcggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtcctcagggttcactcgctgggcccactcacttttgagctgctcgtactctcggct 260

                                                                       
Query: 61  cttacgtttcatgtagtccatccgctcacggccagtcagcccatctgggtacacattaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttacgtttcatgtagtccatccgctcacggccagtcagcccatctgggtacacattaag 320

                                                                       
Query: 121 gaggtaccgccatactacctgccagagacagaagagatggggctgagtttcaactagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gaggtaccgccatactacctgccagagacagaagagatggggctgagtttcaactagtgt 380

                                                                       
Query: 181 gctgccgtacgtacccatgtatgtcaactagttaccacccatctcttgtgacctctgtcc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgccgtacgtacccatgtacgtcaactagttaccacccatctcttgtgacctctgtcc 440

                                                                       
Query: 241 tccttgtgataggtctgccttcctgccactgggacatacccgacagagaccctccttccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttgtgataggtctgccttcctgccactgggacatacccgacagagaccctccttccc 500

                                                                       
Query: 301 tgggatttctctatcccacctatgactgtgttctactgaacatttgatagagtgtgatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggatttctctatcccacctatgactgtgttctactgaacatttgatagagtgtgatgg 560

                                                                       
Query: 361 gttcggtgacggactgaggcggctcacttttcgaagtgaaggctccacaccgccgtggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttcggtgacggactgaggcggctcacttttcgaagtgaaggctccacaccgccgtggta 620

                                                                       
Query: 421 gatcctcaaacgcaactcctcaggccgggagagctgaccttcatgattcaggtacgtgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatcctcaaacgcaactcctcaggccgggagagctgaccttcatgattcaggtacgtgtg 680

                                                                       
Query: 481 gaactcagcatcactcagggggggcttaaaaggcttcacatcttccccataagaccaact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaactcagcatcactcagggggggcttaaaaggcttcacatcttccccataagaccaact 740

                                                                       
Query: 541 cagcacctgctggaccttagacagtgtacgacccacctgggaaggaaaaagggaaagaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagcacctgctggaccttagacagtgtacgacccacctgggaaggaaaaagggaaagaag 800

                                                                       
Query: 601 ctacaggtcccctgtgcaggatagggcagacatcaaccatcgggctctggaatggtatta 660
           ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 801 ctacaggtcccctgtgcaggatagggcaggcatcaaccagcgggctctggaatggtatta 860

                
Query: 661 tcaga 665
           |||||
Sbjct: 861 tcaga 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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