BAC Information

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BAC

Clone NameMSMg01-519D22
ChromosomeX (Build37)
Map Location 67,723,578 - 67,724,175
singlet/doubletsinglet
Overlap geneBC023829
Upstream geneAff2, EG666577, 1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012
Downstream geneEG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993, Ppia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1, Mtmr1, Cd99l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519D22.T7 (MSMg01no519_d22.b1)MSMg01-519D22.TJ (MSMg01no519_d22.g1)
ACCAG590564AG590565
length768769
length of high quality
(start - end)
604 (31 - 634)602 (63 - 664)
definitionCHROMAT_FILE: MSMg01no519_d22.b1 PHD_FILE: MSMg01no519_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:54 2005CHROMAT_FILE: MSMg01no519_d22.g1 PHD_FILE: MSMg01no519_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAATACGACTCCTATATCGAGAGATCCGCGGAATTCTCAACAG
ATACATTACTGAATGGCTGAGAAGAGCTTAAAGAAAAATTAAAAACTCTG
GGGAATGCAAATCAAAACAATCCTGAGATTCCATCTTACACCCATCAGAA
TAGGTAAAATTAAAAAAAAAACAGGAGCTGGAGAGGTGGCTCAGTGGTTA
AGAACACTGACTGCTCTTCCCTCTTCCAGAGGTCCTGATCAATTACCACA
TGGTGTCTCCCAACCATCTGTAATGGGATCTGATGACCTCTTCTGGTGTA
TATTAAGTCTGTGACAGTGTACTTACATAAAACAAACAAATCACAACTCT
GGCCCATAATTCTTCCTGTCTGAAAGAATTACAGGGAAGGAAATGGAGAA
GAACCTGAGAAAAAGAAGGTCCAGCAACAGGCCCACAGTGGGATCCAACT
CAGTGGGAGATCCCAAGGCCTGACACTATTAGTGAGGCTATGGTGAGCTC
ACAAAAAGGGACCTACCATGACCGCACTCCAGAAGACCCAACAAGCAGCT
GAAAGAGTCAGATGCAAATATTTGCACCCAACCAATGGACAGAAGCAGTT
GACCCCTGTTGTTGAATTAGGGAAAAGCTGGAAGAAGCTGAGGAGGATGG
CGACCTTGTAGGAAGACCAGCAGACTCAATTAATCTGGGACCCAGAAATC
TCCCAAACACTGGACCACAAACAAGGCAGCATACACCACCTGATATGATG
GGCCAACACAAATACAGT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTAGGCTGGAGAGATGAGAACAGTTAAGATCACTAGCTG
CTTTTCTAGAGGACATGGGTGCAGTTTTCAGGACCTAAAAGGCAGTTAAT
GATTGACTACAGCTTCAGTTCGAGATGGTACAACATCTTCTGGATTGCAG
GGATCCTGTACAGACTGGATGCACAGACACACATGCTGGCAAAATACTCA
CATAAGATAAGGTAAAAATACATTTTACACTCACTAATTCCATAACAATT
TATTTAAAAGTTCCATGTAGAACACATACTGTATTGGGGTTGAGAAAACA
AAAGTGAGTAATTAAGTCTCCTGCTTCCAAGGGTTTTCTGATAGAAGTCT
ACACAGAAAGCCACAGTTATAATGTGGTGTAACATTTGTATAAATGGTAG
TATGGACAAAGTGAGATGGGAGCTAGGAAAAGAAAGTATGGGATCTGCCT
GAGGCAGTAGGAAAAAGAGAAGTGGTGACCATGGAACTGGTTCCAGAGGC
AATTGGAGAAACAGAGACCCTAAAACAAATAATCAGGCTCACCTGTTAGT
TCTCCTAAATTATTCCAATCCCATGAAAATTGGGCACAGCAGTGCTTTTT
CCTCCACTTGCCCACTGCTTTTACAATCTACTGTAGACTGGCTCTTCTTC
CCAATTCATCACATGGAGTATGAAATATTTTTGTACCCAGATGTTCAGAA
TATGAAATTACTGTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_d22.g1 MSMg01no519_d22.g1 CHROMAT_FILE:
MSMg01no519_d22.g1 PHD_FILE: MSMg01no519_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:54 2005
         (602 letters)



>mm_chrX_67723378_67724379
          Length = 1002

 Score = 1156 bits (598), Expect = 0.0
 Identities = 598/598 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggctggagagatgagaacagttaagatcactagctgcttttctagaggacatgggtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggctggagagatgagaacagttaagatcactagctgcttttctagaggacatgggtgc 260

                                                                       
Query: 61  agttttcaggacctaaaaggcagttaatgattgactacagcttcagttcgagatggtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttttcaggacctaaaaggcagttaatgattgactacagcttcagttcgagatggtaca 320

                                                                       
Query: 121 acatcttctggattgcagggatcctgtacagactggatgcacagacacacatgctggcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatcttctggattgcagggatcctgtacagactggatgcacagacacacatgctggcaa 380

                                                                       
Query: 181 aatactcacataagataaggtaaaaatacattttacactcactaattccataacaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatactcacataagataaggtaaaaatacattttacactcactaattccataacaattta 440

                                                                       
Query: 241 tttaaaagttccatgtagaacacatactgtattggggttgagaaaacaaaagtgagtaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaaagttccatgtagaacacatactgtattggggttgagaaaacaaaagtgagtaat 500

                                                                       
Query: 301 taagtctcctgcttccaagggttttctgatagaagtctacacagaaagccacagttataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagtctcctgcttccaagggttttctgatagaagtctacacagaaagccacagttataa 560

                                                                       
Query: 361 tgtggtgtaacatttgtataaatggtagtatggacaaagtgagatgggagctaggaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtggtgtaacatttgtataaatggtagtatggacaaagtgagatgggagctaggaaaag 620

                                                                       
Query: 421 aaagtatgggatctgcctgaggcagtaggaaaaagagaagtggtgaccatggaactggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagtatgggatctgcctgaggcagtaggaaaaagagaagtggtgaccatggaactggtt 680

                                                                       
Query: 481 ccagaggcaattggagaaacagagaccctaaaacaaataatcaggctcacctgttagttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccagaggcaattggagaaacagagaccctaaaacaaataatcaggctcacctgttagttc 740

                                                                     
Query: 541 tcctaaattattccaatcccatgaaaattgggcacagcagtgctttttcctccacttg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctaaattattccaatcccatgaaaattgggcacagcagtgctttttcctccacttg 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)