BAC Information

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BAC

Clone NameMSMg01-521K15
ChromosomeX (Build37)
Map Location 96,326,662 - 96,489,050
singlet/doubletdoublet
Overlap geneEfnb1
Upstream geneAr, LOC100042324, Ophn1, Yipf6, LOC100042932, Stard8, LOC436219
Downstream genePja1, LOC100042947, Pcna-ps1, EG620592, Eda
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521K15.T7 (MSMg01no521_k15.b1)MSMg01-521K15.TJ (MSMg01no521_k15.g1)
ACCAG592407AG592408
length748751
length of high quality
(start - end)		699 (50 - 748)595 (77 - 671)
definitionCHROMAT_FILE: MSMg01no521_k15.b1 PHD_FILE: MSMg01no521_k15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:04 2005CHROMAT_FILE: MSMg01no521_k15.g1 PHD_FILE: MSMg01no521_k15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,488,355 - 96,489,050)(96,326,662 - 96,327,256)
sequence
NTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTCACTTTTGCTCATTTCTGTGTCCTCACCACTTGGTCTG
GGTACATAGTAATTGCTCAGTAAATCATTTTTGAGTGAACAGATGAATGA
AAGGCTGAGCAAGGTCACCTGGACTGGTGGTTTTGAGGCTTTCTTCTAGA
AGCAGAGAAGTCCACATTTGTCTGGCTGACTCCATTAATGCTTCCACTCT
CCGCTCTACCCCTGCTTCTTGGCAAGCAGCAGCGAGAAGTCTGAAATGCT
GGGCTAGCTCGTGAGCAAGTTGGGAGATCACTCCTGCCTGGAGGCCTAAG
ACCCAGGACCCCTTCCCAGGTAAAGATAGGTTCTAAAGCTTCAAGAGTTT
GCTTTCAAACGAGAAATCATTTTGTTCCTTGTTTCTTTCTCATAATAGAA
GCAGTAAATGTTCAAAAAATCGTTGCCAGGCAATTTTCAGTGTTCCATAA
ATAGGAATAGGTTCTCTTTCCCAATATTGAGCCCCTAACAGTGTCTCGAT
CCAGCCTTGACTACCGTGCCTACTGTCCTAGCAATATCCTTCTGCATCAG
TGCTGTAGAGTGACATGCTTGGTTTCCCTAGTCACAGTGCATGGACACAC
CGTAATTCCTTTAGCTAAGCCACTTTTTTTTTTCTCTGTGCTATAATAAT
CAGGCCACGGACATCCTGATAAGTACGTCTCTGCTGACCTATTCTTTC

CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGCCCTAGACAGTGATGAATA
ACCTCGCCCCTCCTTGTACATTCTCCAGGTAACCAGAGTGAGGGAGCGAC
AGGTGGCCTGGGCCAGACTGCTCCAGGCTCCCCTCGCACCTGGGTTACGT
CTTGTAGCATCAGAGAGAAGCCAGGACAGAGGACCTTGTAGAGGGAGCTG
AGACCAGCTCAACAAAACACAAGAGGGCTGAGATGCCAGGGGGTGGTGCC
TTAGAAAAGCCCTGGCCCCTAGCTGCAGGCCAGAACCTCACCCACCTACT
AGGCTCTGGCTCTCCTAAGCTCTCAGTCCTATGCTCTCATTTTCCAAGCT
CTCTTGGGTTAAGCCATTTGCCTGAACAGGGCCTACAGACTTGTTGCAGG
TGCTAGGAATCCAGGATGGGATCAAAGGGTCATGAGACAGTAGAGAGACA
CAGGGAGGGAGGGAGACCGGGCTTGGTGGAGTTCTTCTCATTGCAGACAC
TATCAGCCTGACCAGAACTGGGCTGTCACCTGACAGATCAAGGTGATCTC
AGTGCAAACACCCATAAAGCAGGCATGCAGCTGGAGCAGGAATAGGGAGG
AGATAGGGAGAAAGAATGGCTGAACCTTTGGCCTTAGAGATCACCCCCAC
ATTGCCTGGCCGCCGTTGTGAAACACCCTTCCGAAGCATAGGGCTCTGCA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_k15.b1 MSMg01no521_k15.b1 CHROMAT_FILE:
MSMg01no521_k15.b1 PHD_FILE: MSMg01no521_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:04 2005
         (699 letters)



>mm_chrX_96488060_96489158
          Length = 1099

 Score = 1323 bits (684), Expect = 0.0
 Identities = 693/696 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtcacttttgctcatttctgtgtcctcaccacttggtctgggtacatagtaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 ggaattctgtcacttttgctcatttctgtgtcctcaccacttggtctgggtacatagtaa 932

                                                                       
Query: 64  ttgctcagtaaatcatttttgagtgaacagatgaatgaaaggctgagcaaggtcacctgg 123
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 931 ttgctcagtaaatcatttttgagtgaacagatgaatgaacggctgagcaaggtcacctgg 872

                                                                       
Query: 124 actggtggttttgaggctttcttctagaagcagagaagtccacatttgtctggctgactc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 actggtggttttgaggctttcttctagaagcagagaagtccacatttgtctggctgactc 812

                                                                       
Query: 184 cattaatgcttccactctccgctctacccctgcttcttggcaagcagcagcgagaagtct 243
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cattaatgcttccactctctgctctacccctgcttcttggcaagcagcagcgagaagtct 752

                                                                       
Query: 244 gaaatgctgggctagctcgtgagcaagttgggagatcactcctgcctggaggcctaagac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gaaatgctgggctagctcgtgagcaagttgggagatcactcctgcctggaggcctaagac 692

                                                                       
Query: 304 ccaggaccccttcccaggtaaagataggttctaaagcttcaagagtttgctttcaaacga 363
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ccaggaccccttcccagataaagataggttctaaagcttcaagagtttgctttcaaacga 632

                                                                       
Query: 364 gaaatcattttgttccttgtttctttctcataatagaagcagtaaatgttcaaaaaatcg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaaatcattttgttccttgtttctttctcataatagaagcagtaaatgttcaaaaaatcg 572

                                                                       
Query: 424 ttgccaggcaattttcagtgttccataaataggaataggttctctttcccaatattgagc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttgccaggcaattttcagtgttccataaataggaataggttctctttcccaatattgagc 512

                                                                       
Query: 484 ccctaacagtgtctcgatccagccttgactaccgtgcctactgtcctagcaatatccttc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ccctaacagtgtctcgatccagccttgactaccgtgcctactgtcctagcaatatccttc 452

                                                                       
Query: 544 tgcatcagtgctgtagagtgacatgcttggtttccctagtcacagtgcatggacacaccg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgcatcagtgctgtagagtgacatgcttggtttccctagtcacagtgcatggacacaccg 392

                                                                       
Query: 604 taattcctttagctaagccacttttttttttctctgtgctataataatcaggccacggac 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 taattcctttagctaagccacttttttttttctctgtgctataataatcaggccacggac 332

                                               
Query: 664 atcctgataagtacgtctctgctgacctattctttc 699
           ||||||||||||||||||||||||||||||||||||
Sbjct: 331 atcctgataagtacgtctctgctgacctattctttc 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_k15.g1 MSMg01no521_k15.g1 CHROMAT_FILE:
MSMg01no521_k15.g1 PHD_FILE: MSMg01no521_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:04 2005
         (595 letters)



>mm_chrX_96326462_96327456
          Length = 995

 Score = 1127 bits (583), Expect = 0.0
 Identities = 592/595 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagccctagacagtgatgaataacctcgcccctccttgtacattctccaggtaaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagccctagacagtgatgaataacctcgcccctccttgtacattctccaggtaaccag 260

                                                                       
Query: 61  agtgagggagcgacaggtggcctgggccagactgctccaggctcccctcgcacctgggtt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 agtgagggagcgacaggtggcctgggccagactgctccaggctccccttgcacctgggtt 320

                                                                       
Query: 121 acgtcttgtagcatcagagagaagccaggacagaggaccttgtagagggagctgagacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgtcttgtagcatcagagagaagccaggacagaggaccttgtagagggagctgagacca 380

                                                                       
Query: 181 gctcaacaaaacacaagagggctgagatgccagggggtggtgccttagaaaagccctggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcaacaaaacacaagagggctgagatgccagggggtggtgccttagaaaagccctggc 440

                                                                       
Query: 241 ccctagctgcaggccagaacctcacccacctactaggctctggctctcctaagctctcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctagctgcaggccagaacctcacccacctactaggctctggctctcctaagctctcag 500

                                                                       
Query: 301 tcctatgctctcattttccaagctctcttgggttaagccatttgcctgaacagggcctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctatgctctcattttccaagctctcttgggttaagccatttgcctgaacagggcctac 560

                                                                       
Query: 361 agacttgttgcaggtgctaggaatccaggatgggatcaaagggtcatgagacagtagaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacttgttgcaggtgctaggaatccaggatgggatcaaagggtcatgagacagtagaga 620

                                                                       
Query: 421 gacacagggagggagggagaccgggcttggtggagttcttctcattgcagacactatcag 480
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacacagggagggagagagactgggcttggtggagttcttctcattgcagacactatcag 680

                                                                       
Query: 481 cctgaccagaactgggctgtcacctgacagatcaaggtgatctcagtgcaaacacccata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgaccagaactgggctgtcacctgacagatcaaggtgatctcagtgcaaacacccata 740

                                                                  
Query: 541 aagcaggcatgcagctggagcaggaatagggaggagatagggagaaagaatggct 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagcaggcatgcagctggagcaggaatagggaggagatagggagaaagaatggct 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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