Query= MSMg01no523_l21.b1 MSMg01no523_l21.b1 CHROMAT_FILE:
MSMg01no523_l21.b1 PHD_FILE: MSMg01no523_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:45 2005
(512 letters)
>mm_chrX_57316939_57317850
Length = 912
Score = 857 bits (443), Expect = 0.0
Identities = 479/499 (95%), Gaps = 15/499 (3%)
Strand = Plus / Minus
Query: 5 gaattccaaggtgaattctggtgcttcagaaccagttgagaatgaacaaggtgtcaattt 64
||||||||||||||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 520 gaattccaaggtgaaccctggtgctttagaaccagttgagaa---------tgtcaattt 470
Query: 65 ccagacattcttgggaggagactgtgagaagaacctcacagaactagtatccagtaagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ccagacattcttgggaggagactgtgagaagaacctcacagaactagtatccagtaagga 410
Query: 125 tagggtggagaatttcttgtcttttgaacttatgcttaagaaaataagactctctctctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tagggtggagaatttcttgtcttttgaacttatgcttaagaaaataagactctctctctt 350
Query: 185 tctctctctctaatgtatgtatacatgcttgtgaatgtgactatagatgtgtgtgtatgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tctctctctctaatgtatgtatacatgcttgtgaatgtgactatagatgtgtgtgtatgg 290
Query: 245 tatatatgcatataattggatatgttactatagatatatatgtatgctatatatgtatat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tatatatgcatataattggatatgttactatagatatatatgtatgctatatatgtatat 230
Query: 305 acttgtgtatgtcactatagatgtatatgtgtatgatgtatatgtaagagcttgtgaatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 acttgtgtatgtcactatagatgtatatgtgtatgatgtatatgtaagagcttgtgaatg 170
Query: 365 tgaacatagatgtatgtgtatggtgtatggtgtatatatgaatgcttgtgaatgtgaaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tgaacatagatgtatgtgtatggtgtatggtgtatatatgaatgcttgtgaatgtgaaca 110
Query: 425 tatgtgtcaattatatatatatatat--gtgtgtgtatgtgtgtatatatat----atat 478
|||||||||||||||||||||||||| ||||||||||||||||||| |||| || |
Sbjct: 109 tatgtgtcaattatatatatatatatatgtgtgtgtatgtgtgtatacatatgtgtatgt 50
Query: 479 atatatatatatatatata 497
|||||||||||||||||||
Sbjct: 49 atatatatatatatatata 31
Score = 66.5 bits (34), Expect = 4e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 466 tatatatatatatatatatatatatatatataca 499
||||||||||||||||||||||||||||||||||
Sbjct: 19 tatatatatatatatatatatatatatatataca 52
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 466 tatatatatatatatatatatatatatatata 497
||||||||||||||||||||||||||||||||
Sbjct: 13 tatatatatatatatatatatatatatatata 44
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 466 tatatatatatatatatatatatatatatata 497
||||||||||||||||||||||||||||||||
Sbjct: 15 tatatatatatatatatatatatatatatata 46
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 466 tatatatatatatatatatatatatatatata 497
||||||||||||||||||||||||||||||||
Sbjct: 17 tatatatatatatatatatatatatatatata 48
Score = 62.6 bits (32), Expect = 6e-14
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 466 tatatatatatatatatatatatatatatatacaca 501
|||||||||||||||||||||||||||| |||||||
Sbjct: 23 tatatatatatatatatatatatatatacatacaca 58
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 467 atatatatatatatatatatatatatatata 497
|||||||||||||||||||||||||||||||
Sbjct: 12 atatatatatatatatatatatatatatata 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 144
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 7
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_l21.g1 MSMg01no523_l21.g1 CHROMAT_FILE:
MSMg01no523_l21.g1 PHD_FILE: MSMg01no523_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:45 2005
(688 letters)
>mm_chrX_57160717_57161804
Length = 1088
Score = 1234 bits (638), Expect = 0.0
Identities = 677/690 (98%), Gaps = 3/690 (0%)
Strand = Plus / Plus
Query: 1 ttgtgtaaagaagacat-agggaattggattataagctacatgagtcaacatggaactat 59
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtgtaaagaagacatga-ggaattggattataagctacatgagtcaacatggaactat 259
Query: 60 ttcaaacctagagaatgattagcacctcttcaagcttaatgcatttaccaaagggaaggg 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 ttcaaacctagagaatgattagcacctcttcaagcttaatgcatttacccaagggaaggg 319
Query: 120 aaagtcattgtagaggaaagagaactgttggagtgctatcctcaagtcattaagtaggat 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 320 aaagtcattgtagaggaaagagaactgttggagtgctatccttaagtcattaagtaggat 379
Query: 180 ctactgtagaactgctctgtaacagaagcagtaagagtttgtctctactaagaacatagt 239
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 380 ctactgtagaactgctctgtaacagaatcagtaagactttgtctctactaagaacatagt 439
Query: 240 aatctgaagctaaaggtacataccaatggctaagggtgtatgtttggagaagaatatggg 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 aatctgaaactaaaggtacataccaatggctaagggtgtatgtttggagaagaatatagg 499
Query: 300 ggaatacccttctgactatttcagtatcatcagtaaaatcagcactgtgaactctatatg 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaaatacccttctgactatttcagtatcatcagtaaaatcagcactgtgaactctatatg 559
Query: 360 actgagtagcttgagga-gtgttgcatgtccaagagaaggatgaaatgtgagagacagcc 418
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 actgagtagcttgaggaagtgttgcatgtctaagagaaggatgaaatgtgagagacagcc 619
Query: 419 atgtggagaaatggttacagaaacagaagtaggaaaaagtaatggcattattaaatggta 478
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 atatggagaaatggttacagaaacagaagtagaaaaaagtaatggcattattaaatggta 679
Query: 479 ctataggcctatttagagttcacaaaaataatcagcaagactgttcccacccatatcagg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctataggcctatttagagttcacaaaaataatcagcaagactgttcccacccatatcagg 739
Query: 539 tgtcgttgcacaggtaaatagactgaaaaggcagagatgcatttaaccagggttgtgctt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgtcgttgcacaggtaaatagactgaaaaggcagagatgcatttaaccagggttgtgctt 799
Query: 599 tggacaggtgagaaatggaggcaaatggttagcaggcatattttcacaggatcaatacaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tggacaggtgagaaatggaggcaaatggttagcaggcatattttcacaggatcaatacaa 859
Query: 659 tgattgagcatgtaatttaaacttgggaaa 688
||||||||||||||||||||||||||||||
Sbjct: 860 tgattgagcatgtaatttaaacttgggaaa 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
