BAC Information

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BAC

Clone NameMSMg01-528F05
ChromosomeX (Build37)
Map Location 35,564,480 - 35,565,113
singlet/doubletsinglet
Overlap gene6430550H21Rik
Upstream geneAnkrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33
Downstream geneEG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528F05.T7 (MSMg01no528_f05.b1)MSMg01-528F05.TJ (MSMg01no528_f05.g1)
ACCAG597469AG597470
length750751
length of high quality
(start - end)
697 (52 - 748)619 (82 - 700)
definitionCHROMAT_FILE: MSMg01no528_f05.b1 PHD_FILE: MSMg01no528_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:53 2005CHROMAT_FILE: MSMg01no528_f05.g1 PHD_FILE: MSMg01no528_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTACCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACAGGTTATTACATCATCAGAAAGGACTATACACACTAT
AGCAGTGTCACTTAAAAATATCAACACTATCTCATGCCAGATCTTTACAG
CTGTGACATGGTTTAAATTCAATAATCCATCCCCAAGAGGAGCCCACCCA
AAGCAAAAATCAAATTTATCCATCCATTATAAGATGATCCATCCGTAGAC
TGCATCTTAACCCAATACAGTCATCATATTGTAGTTTTTAGCAGAGTTTG
TTCTGCGCAAAAGACGCTCCTCCTTGCAACCGCTTCTGCTATCTACCATT
TGTGCATTGGTGCTGTTGTGAGAGCTACCTCCCACTGGTGAGGCTTCATA
CAGCACACAGATGGAGCCATCCTCTCCAATCCTGTAGGACACTTCATAGG
GATCAACCCACAGTGTGAGTTCACTTGGGAGAAGCCTGAACAACTCTCTA
CTGCTCAGTCCAATCTGCTGCGCAGCCTGACTGACAAGAGGATCCATCTT
ATGGTTGATGCGAATACACCTGTAACCCGATCCCTTGCAGGGTTGCTCTG
GGAACCAGTGATGTTTGTAGTGTTCTACCAGCAGCTCCTGCAGGCTCTGG
CTGAAGGTCTGCAGCAGCTCCTCATTCCTGAGGCCCTTGGTGCAGAGGAA
CTTGCAGATGAAGGTTGCTGCAGCACAGATCTCACCAATCATGGTGGCTG

CCCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTGGGGGTAGAGATGAG
GCCACCAAAGAGATGATGTCATCAAAATGAGAACATGATGTAGAAAGTTC
TAGAATATAAATGTGTGAGCCAAAACAAAACCCTTGGCTTAGGTCCAAAT
GGAGTTGGTGCCTGGCAGGTTTGTTCCTTCATTTCAGTGCTCAAGGCTGA
TGGAAAGATAGGAGCACGGTGCTGGCAGCACTTCCATACAATGGACTAGG
AGCCACTTTTTTTTTAAGAGTTGTTGCAGAGTTCTGATGTGAAAAAGGAT
GTCTTCACACCTTAACCAGAAGTGCTCAAGAGTGGTCCTGAGGAAATGGC
CAATGAAGTGTTGCTTGATCAAAGACATAAAGATTAAGATGAATCTTGAA
AAAGCCATCATATATCCATGCATTTGGTACCTAAGTGGCGTCTCTGGTGG
TTTAGGATAAGTCAGAGAATAAAAGAGGCATTTTTTTTTTTTTTTGCAAA
GTCCATGACCATTGTCTCAGTAGACCCAGTTTGGTCCAGGCAAGAGTGCT
TTCACCATTTCCTGTGCCTCCTAGGAACCTTTTGTGTGACTAGAGCTCAG
AAAGTTTGTGATCAATAATGGGGAGGGGAATTTTACAATTGGAGCTCCAG
AATCTCAATGGAAGTAGGCACGCGCGCGCACGCGCACACACACACACACA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_f05.g1 MSMg01no528_f05.g1 CHROMAT_FILE:
MSMg01no528_f05.g1 PHD_FILE: MSMg01no528_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:53 2005
         (619 letters)



>mm_chrX_35564123_35565136
          Length = 1014

 Score = 1131 bits (585), Expect = 0.0
 Identities = 614/639 (96%), Gaps = 25/639 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgggggtagagatgaggccaccaaagagatgatgtcatcaaaatgagaacatgatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 tagtgggggtagagatgaggccaccaaagagatgatgtcatcaaaatgagaacatgatgt 932

                                                                       
Query: 61  agaaagttctagaatataaatgtgtgagccaaaacaaaacccttggcttaggtccaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 agaaagttctagaatataaatgtgtgagccaaaacaaaacccttggcttaggtccaaatg 872

                                                                       
Query: 121 gagttggtgcctggcaggtttgttccttcatttcagt--------------------gct 160
           |||||||||||||||||||||||||||||||||||||                    |||
Sbjct: 871 gagttggtgcctggcaggtttgttccttcatttcagtgctctgtagtctgtagggaggct 812

                                                                       
Query: 161 caaggctgatggaaagataggagcacggtgctggcagcacttccatacaatggactagga 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 caaggctgatggaaagataggagcacggtgctggcagcacttccatacaatggactagga 752

                                                                       
Query: 221 gccactttttttttaagagttgttgcagagttctgatgtgaaaaaggatgtcttcacacc 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gccactttttttttaagagttgttgcagagttctgatgtgaaaaaggatgtcttcacacc 692

                                                                       
Query: 281 ttaaccagaagtgctcaagagtggtcctgaggaaatggccaatgaagtgttgcttgatca 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttaaccagaagtgctcaagagtggtcctgaggaaatggccaatgaagtgttgcttgatca 632

                                                                       
Query: 341 aagacataaagattaagatgaatcttgaaaaagccatcatatatccatgcatttggtacc 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aagacataaagattaagatgaatcttgaaaaagccatcatatatccatgcatttggtacc 572

                                                                       
Query: 401 taagtggcgtctctggtggtttaggataagtcagagaataaaagaggcattttttttttt 460
           |||||||||||||||||||||||||||||||||||||||||||||||||     ||||||
Sbjct: 571 taagtggcgtctctggtggtttaggataagtcagagaataaaagaggca-----tttttt 517

                                                                       
Query: 461 ttttgcaaagtccatgaccattgtctcagtagacccagtttggtccaggcaagagtgctt 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttttgcaaagtccatgaccattgtctcagtagacccagtttggtccaggcaagagtgctt 457

                                                                       
Query: 521 tcaccatttcctgtgcctcctaggaaccttttgtgtgactagagctcagaaagtttgtga 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcaccatttcctgtgcctcctaggaaccttttgtgtgactagagctcagaaagtttgtga 397

                                                  
Query: 581 tcaataatggggaggggaattttacaattggagctccag 619
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tcaataatggggaggggaattttacaattggagctccag 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1014
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1004
Effective search space:   611436
Effective search space used:   611436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)